RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM20BO75063 409 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 DBTP11182 482 aaKnown RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 EPS8Q12929 822 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 GPR153Q6NV75 609 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 MAL2Q969L2 176 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 ZBTB20Q9HC78 741 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 PDP1Q9P0J1 537 aaPredicted RBP16■□□□□ 0.15
CCDC88B-210ENST00000494566 POU2F3Q9UKI9 436 aa16■□□□□ 0.15
CCDC88B-210ENST00000494566 PABPN1LA6NDY0 278 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 TULP3O75386 442 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 DNTTP04053 509 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 CTSAP10619 480 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 GTF2E2P29084 291 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 METAP1P53582 386 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 CTSCP53634 463 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 TPTEP56180 551 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 GRSF1Q12849 480 aaKnown RBP eCLIP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 COL9A2Q14055 689 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 COLEC12Q5KU26 742 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ZNF621Q6ZSS3 439 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ADIPOR2Q86V24 386 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 MICU2Q8IYU8 434 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 HDAC2Q92769 488 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 KIF17Q9P2E2 1029 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ENPP5Q9UJA9 477 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ERVK-11Q9UQG0 969 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 PCDHGA4Q9Y5G9 962 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 KIAA1671Q9BY89 1806 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 SGTAO43765 313 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 OPN1SWP03999 348 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 CTSLP07711 333 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 BDKRB1P46663 353 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 EEF1AKMT2Q5JPI9 291 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 FAM180BQ6P0A1 224 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ELMOD1Q8N336 334 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 TRIM43Q96BQ3 446 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 ZSWIM3Q96MP5 696 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 RBM4BQ9BQ04 359 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 TCF25Q9BQ70 676 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 RBM4Q9BWF3 364 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 GMPPBQ9Y5P6 360 aa15.99■□□□□ 0.15
CCDC88B-210ENST00000494566 A0A096LPI6 279 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 E7EQ34 232 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 TBX1O43435 398 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CLTBP09497 229 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 NUDT7P0C024 238 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 HSMCR30P0CW71 290 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 POU2F1P14859 743 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 C21orf33P30042 268 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 PFN3P60673 137 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 UAP1L1Q3KQV9 507 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 C6orf183Q5T699 404 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 PDE12Q6L8Q7 609 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 NIPAL1Q6NVV3 410 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 LILRA6Q6PI73 481 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CLECL1Q8IZS7 167 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 PROX1Q92786 737 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 MUL1Q969V5 352 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 KCNC2Q96PR1 638 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CPPED1Q9BRF8 314 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 FAM83DQ9H4H8 585 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 GORASP2Q9H8Y8 452 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 C3orf18Q9UK00 162 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 SNX6Q9UNH7 406 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 IGLV3-16A0A075B6K0 115 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 TRBV5-3A0A0A0MS03 114 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 ABHD14A-ACY1A0A1B0GW23 586 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 GRXCR2A6NFK2 248 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 TMEM221A6NGB7 291 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 TSPAN6O43657 245 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 JRKO75564 520 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 SLC6A12P48065 614 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CLK3P49761 638 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 DAPP51397 102 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 LRRC26Q2I0M4 334 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 RBM48Q5RL73 367 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CACTIN-AS1Q8N1I8 211 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 GLB1L3Q8NCI6 653 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 GIN1Q9NXP7 522 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 RFXANKO14593 260 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CBSLP0DN79 551 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CBSP35520 551 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 RECQLP46063 649 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CLDN8P56748 225 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 IRF8Q02556 426 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 MESP2Q0VG99 397 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 XKR6Q5GH73 641 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 FRG2Q64ET8 278 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 ADHFE1Q8IWW8 467 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 CLIP4Q8N3C7 705 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 FRG2BQ96QU4 278 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 WRAP53Q9BUR4 548 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 SLC29A3Q9BZD2 475 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 REXO4Q9GZR2 422 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 SIAEQ9HAT2 523 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 DNAJC11Q9NVH1 559 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 TAS2R16Q9NYV7 291 aa15.98■□□□□ 0.15
CCDC88B-210ENST00000494566 ARHGEF33A8MVX0 844 aa15.97■□□□□ 0.15
CCDC88B-210ENST00000494566 PCMT1P22061 227 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms