RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CXorf57Q6NSI4 855 aaKnown RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MZT2BQ6NZ67 158 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FBXO46Q6PJ61 603 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SNX20Q7Z614 316 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CARM1Q86X55 608 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LILRA3Q8N6C8 439 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL17FQ96PD4 163 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL23AQ9NPF7 189 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NLE1Q9NVX2 485 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LEF1Q9UJU2 399 aaPredicted RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CORINQ9Y5Q5 1042 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM240BA0A1B0GVZ2 78 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BBIP1A8MTZ0 92 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMX2-CTNND1H3BSU7 103 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GRID2O43424 1007 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TRBC1P01850 177 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MMP2P08253 660 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ACADMP11310 421 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 G6PDP11413 515 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF26P17031 533 aaPredicted RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DCKP27707 260 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PLA2G16P53816 162 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IHHQ14623 411 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LAPTM4AQ15012 233 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NPTX1Q15818 432 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RFX4Q33E94 735 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PYDC2Q56P42 97 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GALNT10Q86SR1 603 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TAGAPQ8N103 731 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR10G6Q8NH81 332 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GFM1Q96RP9 751 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PKMYT1Q99640 499 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HDHD2Q9H0R4 259 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DNMT3BQ9UBC3 853 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 H3BQ06 376 aaPredicted RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IFRD1O00458 451 aaPredicted RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC9A3R1O14745 358 aaPredicted RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RGS14O43566 566 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TULP3O75386 442 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C8BP07358 591 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TSPAN19P0C672 248 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UMPSP11172 480 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FMO3P31513 532 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GPC1P35052 558 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ADRA1AP35348 466 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SCN1BQ07699 218 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INTS11Q5TA45 600 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SULT1C3Q6IMI6 304 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SYVN1Q86TM6 617 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TCEAL8Q8IYN2 117 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LIX1Q8N485 282 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KDM1BQ8NB78 822 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR10A6Q8NH74 314 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SPPL2AQ8TCT8 520 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR8D1Q8WZ84 308 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MSANTD3Q96H12 275 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MGME1Q9BQP7 344 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MIEF1Q9NQG6 463 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INTS10Q9NVR2 710 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF222Q9UK12 451 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BOLA1Q9Y3E2 137 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DYRK1BQ9Y463 629 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UGT2A1Q9Y4X1 527 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 A0A1B0GW55 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ARPC2O15144 300 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TSPAN6O43657 245 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TGFB1P01137 390 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L2P0CJ85 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L3P0CJ86 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L4P0CJ87 422 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L5P0CJ88 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L6P0CJ89 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4L7P0CJ90 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OGNP20774 298 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RPL34P49207 117 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DESI1Q6ICB0 168 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FAM131AQ6UXB0 335 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LKAAEAR1Q8TD35 194 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAELQ96JY0 434 aaKnown RBP10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF599Q96NL3 588 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KCNS3Q9BQ31 491 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DUX4Q9UBX2 424 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MSRAQ9UJ68 235 aa10.43□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 A0A1B0GTL3 188 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ANTXRLA6NF34 631 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DRGXA6NNA5 263 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IGLV3-25P01717 112 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ACP5P13686 325 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C4BPBP20851 252 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MATN1P21941 496 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NSG1P42857 185 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAPK8P45983 427 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZXDBP98169 803 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SUZ12Q15022 739 aaKnown RBP10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OXA1LQ15070 435 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CRTC1Q6UUV9 634 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RNF111Q6ZNA4 994 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LRRC17Q8N6Y2 441 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF614Q8N883 585 aa10.42□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ANKFN1Q8N957 763 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms