RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 CLDN1O95832 211 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 VTNP04004 478 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 SERPING1P05155 500 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 LEPRP48357 1165 aaKnown RBP4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 RGS7P49802 495 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 CLDN15P56746 228 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 GUCY2DQ02846 1103 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 TFCP2Q12800 502 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 FAM174BQ3ZCQ3 159 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 GPR33Q49SQ1 333 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 HECTD3Q5T447 861 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 PET117Q6UWS5 81 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 CHMP1BQ7LBR1 199 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 NRARPQ7Z6K4 114 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 ABI3BPQ7Z7G0 1075 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 PHLDB2Q86SQ0 1253 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 METTL23Q86XA0 190 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 VSIG1Q86XK7 387 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 DZIP1Q86YF9 867 aaKnown RBP4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 FAM219AQ8IW50 185 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 OR4C15Q8NGM1 316 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 GRK7Q8WTQ7 553 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNRF4Q8WWF5 429 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 PIK3R3Q92569 461 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 NSMAFQ92636 917 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 CCDC47Q96A33 483 aaKnown RBP4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 TBC1D31Q96DN5 1066 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF486Q96H40 463 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 KRT12Q99456 494 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 RIMS4Q9H426 269 aaPredicted RBP4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 ACTL8Q9H568 366 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 SPHK2Q9NRA0 654 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 ODF2LQ9ULJ1 636 aa4.24□□□□□ -1.73
HMGB1P38-201ENST00000490557 A0A087WUV0 522 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 TRBV5-5A0A0J9YX44 114 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 C15orf61A6NNL5 157 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 WDR46O15213 610 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 HMMRO75330 724 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 KRT33AO76009 404 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 PGLSO95336 258 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 HSPA4LO95757 839 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 VIMP08670 466 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SPP1P10451 314 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 DPEP1P16444 411 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 CRKLP46109 303 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 LUMP51884 338 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SULT2A1Q06520 285 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SMC1AQ14683 1233 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 PTPN14Q15678 1187 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SHEQ5VZ18 495 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF772Q68DY9 489 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SHQ1Q6PI26 577 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 SLC24A5Q71RS6 500 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 LCA5Q86VQ0 697 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 TIGD4Q8IY51 512 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 FAM89BQ8N5H3 189 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 MSANTD4Q8NCY6 345 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 C9orf43Q8TAL5 461 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 GATAD1Q8WUU5 269 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 POM121L2Q96KW2 1035 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 AGAP3Q96P47 875 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 CDCA3Q99618 268 aaPredicted RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 EDEM3Q9BZQ6 932 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZWILCHQ9H900 591 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 DBNDD1Q9H9R9 158 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 TMCC3Q9ULS5 477 aa4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 PA2G4Q9UQ80 394 aaKnown RBP4.23□□□□□ -1.73
HMGB1P38-201ENST00000490557 IL16Q14005 1332 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 HTR3EA5X5Y0 456 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 IGHEP01854 428 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 GBAP04062 536 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 ELAVL4P26378 380 aaKnown RBP4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 HLA-FP30511 346 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 ALDH1B1P30837 517 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 GP5P40197 560 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 OPRL1P41146 370 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 PRKCIP41743 596 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF131P52739 623 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 MFAP3P55082 362 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 HUNKP57058 714 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 PPP2R5CQ13362 524 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 DRP2Q13474 957 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 CDH18Q13634 790 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 TMEM132DQ14C87 1099 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 EFTUD2Q15029 972 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 EXT1Q16394 746 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 SLC10A5Q5PT55 438 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 SPOUT1Q5T280 376 aaKnown RBP4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 FAM91A1Q658Y4 838 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 FAAP20Q6NZ36 180 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 TTC27Q6P3X3 843 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 FUT10Q6P4F1 479 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 NOTUMQ6P988 496 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 SUSD1Q6UWL2 747 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF497Q6ZNH5 498 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 IQCA1Q86XH1 822 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 RCOR2Q8IZ40 523 aa4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.22□□□□□ -1.73
HMGB1P38-201ENST00000490557 ZNF519Q8TB69 540 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms