RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 C10orf90Q96M02 699 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 DPH2Q9BQC3 489 aaPredicted RBP17.82■□□□□ 0.44
PTCD3-217ENST00000488801 CCDC77Q9BR77 488 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 FAM117AQ9C073 453 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 SPNS1Q9H2V7 528 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 PRORYQ9H606 182 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 CNOT10Q9H9A5 744 aaKnown RBP17.82■□□□□ 0.44
PTCD3-217ENST00000488801 WWOXQ9NZC7 414 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 GPRC5BQ9NZH0 403 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 CD274Q9NZQ7 290 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 COPG2Q9UBF2 871 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 ATMQ13315 3056 aa17.82■□□□□ 0.44
PTCD3-217ENST00000488801 SYCE1LA8MT33 242 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 MAP2K7O14733 419 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 P2RX6O15547 441 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 WDR47O94967 919 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 SBK3P0C264 359 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 BCL6P41182 706 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 HSPA7P48741 367 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 PCDH1Q08174 1060 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 CDC16Q13042 620 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 GRM7Q14831 915 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 SETDB1Q15047 1291 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 WASHC2DQ5SRD0 308 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 CATSPEREQ5SY80 951 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 BROXQ5VW32 411 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 KLC3Q6P597 504 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 LRRC70Q7Z2Q7 622 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 LCA5Q86VQ0 697 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 PLD3Q8IV08 490 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 CT55Q8WUE5 264 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 EXT2Q93063 718 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 ALKBH8Q96BT7 664 aaKnown RBP17.81■□□□□ 0.44
PTCD3-217ENST00000488801 WDR34Q96EX3 536 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 SLC45A3Q96JT2 553 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 XPR1Q9UBH6 696 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 CROTQ9UKG9 612 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 PADI1Q9ULC6 663 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 KCNE2Q9Y6J6 123 aa17.81■□□□□ 0.44
PTCD3-217ENST00000488801 SUPT3HB4E1H0 165 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 C21orf140B9A014 251 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 DSCR3O14972 297 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 PRAMEF4O60810 478 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CDH16O75309 829 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 SUPT3HO75486 399 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 STK16O75716 305 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CCR8P51685 355 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 ARSFP54793 590 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 DNASE1L3Q13609 305 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 COL28A1Q2UY09 1125 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CRTC2Q53ET0 693 aaPredicted RBP17.8■□□□□ 0.44
PTCD3-217ENST00000488801 FBXO48Q5FWF7 155 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 PRAMEF9Q5VWM5 478 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 SLCO4C1Q6ZQN7 724 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 ADCK2Q7Z695 626 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CYP4X1Q8N118 509 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 HNRNPLLQ8WVV9 542 aaKnown RBP17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CLIP3Q96DZ5 547 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 TM4SF19Q96DZ7 209 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 TSNARE1Q96NA8 513 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CD244Q9BZW8 370 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CHST8Q9H2A9 424 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CPNE5Q9HCH3 593 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 CUTCQ9NTM9 273 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 DNAJC11Q9NVH1 559 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 DHCR7Q9UBM7 475 aaKnown RBP17.8■□□□□ 0.44
PTCD3-217ENST00000488801 IL17BQ9UHF5 180 aa17.8■□□□□ 0.44
PTCD3-217ENST00000488801 RUVBL1Q9Y265 456 aaKnown RBP17.8■□□□□ 0.44
PTCD3-217ENST00000488801 A0A1B0GX78 115 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 TRBC2A0A5B9 178 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 TK2O00142 265 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 LCMT2O60294 686 aaKnown RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 RBP1P09455 135 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 RAB40ALP0C0E4 278 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 CCNYL3P0C7X3 344 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 GNAZP19086 355 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 DLSTP36957 453 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 AGTR2P50052 363 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 ALDH18A1P54886 795 aaKnown RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 VAC14Q08AM6 782 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 HKDC1Q2TB90 917 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 ATG9BQ674R7 924 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 FAM199XQ6PEV8 388 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 NXPE4Q6UWF7 544 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 TMPRSS11BQ86T26 416 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 RIBC1Q8N443 379 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 CSNK1A1LQ8N752 337 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 TTC29Q8NA56 475 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 MFSD9Q8NBP5 474 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 OR2W6PQ8NHA6 318 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 ESAMQ96AP7 390 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 RUFY1Q96T51 708 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 MRPL57Q9BQC6 102 aaKnown RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 NDC1Q9BTX1 674 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 EFHD1Q9BUP0 239 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 EHD1Q9H4M9 534 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 GPN2Q9H9Y4 310 aaPredicted RBP17.79■□□□□ 0.44
PTCD3-217ENST00000488801 SLC22A11Q9NSA0 550 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 STARD5Q9NSY2 213 aa17.79■□□□□ 0.44
PTCD3-217ENST00000488801 TBK1Q9UHD2 729 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms