RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CUEDC2Q9H467 287 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 CHST11Q9NPF2 352 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 FAM207AQ9NSI2 230 aaPredicted RBP4.71□□□□□ -1.66
UPF3B-203ENST00000478840 PDRG1Q9NUG6 133 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 KCNK6Q9Y257 313 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 ATP6V0A2Q9Y487 856 aa4.71□□□□□ -1.66
UPF3B-203ENST00000478840 SAA2-SAA4A0A096LPE2 208 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 C2orf92A0A1B0GVN3 265 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 TMEM129A0AVI4 362 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 MAGEB16A2A368 324 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 TXNL1O43396 289 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 PRKNO60260 465 aaPredicted RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ZBTB11O95625 1053 aaPredicted RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 SLC4A1P02730 911 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 MMP10P09238 476 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 F3P13726 295 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 DUTP33316 252 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 GPC3P51654 580 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 DSCR9P59020 149 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 LINC00205P59089 165 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 MRPS21P82921 87 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 DMP1Q13316 513 aaPredicted RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ACKR1Q16570 336 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 SPATA2LQ8IUW3 424 aaPredicted RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 CDK20Q8IZL9 346 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 EID3Q8N140 333 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 PRSS35Q8N3Z0 413 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 OR52E1Q8NGJ3 308 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 EXOC6Q8TAG9 804 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF560Q96MR9 790 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 IL17FQ96PD4 163 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 FAM111AQ96PZ2 611 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 DDX50Q9BQ39 737 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 CCDC3Q9BQI4 270 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 URM1Q9BTM9 101 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 OR2B2Q9GZK3 357 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 RIMS4Q9H426 269 aaPredicted RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 DDX31Q9H8H2 851 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 SYTL2Q9HCH5 934 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 RAVER2Q9HCJ3 691 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 RAB9BQ9NP90 201 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 CD93Q9NPY3 652 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 INTS10Q9NVR2 710 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 PTTG2Q9NZH5 202 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ACTR3BQ9P1U1 418 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 CCPG1Q9ULG6 757 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 EXOC6BQ9Y2D4 811 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF510Q9Y2H8 683 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 STRAPQ9Y3F4 350 aaKnown RBP4.7□□□□□ -1.66
UPF3B-203ENST00000478840 KIAA1217Q5T5P2 1943 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 NPHP3Q7Z494 1330 aa4.7□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF197O14709 1029 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 KRT33AO76009 404 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 RAF1P04049 648 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 DESP17661 470 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 NR1D1P20393 614 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SSTR1P30872 391 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SFTPDP35247 375 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 OR3A3P47888 321 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF132P52740 706 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 GAS1P54826 345 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 CDH11P55287 796 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 RPP38P78345 283 aaKnown RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 HTD2P86397 168 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 HERC3Q15034 1050 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TAF13Q15543 124 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ZC2HC1CQ53FD0 456 aaPredicted RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 CAPRIN2Q6IMN6 1127 aaKnown RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TTC27Q6P3X3 843 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 CTR9Q6PD62 1173 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 MFSD7Q6UXD7 560 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 B3GLCTQ6Y288 498 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SIGLEC15Q6ZMC9 328 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ANO5Q75V66 913 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 MARK2Q7KZI7 788 aaKnown RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 C16orf82Q7Z2V1 217 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ARMC9Q7Z3E5 817 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 CPEB2Q7Z5Q1 589 aaKnown RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TMEM126BQ8IUX1 230 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 RCOR2Q8IZ40 523 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 NAGSQ8N159 534 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ANKRD20A12PQ8NF67 263 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SMG7Q92540 1137 aaKnown RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 NEUROG1Q92886 237 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SLCO4A1Q96BD0 722 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 DTD2Q96FN9 168 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 ZNF479Q96JC4 524 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 DUX5Q96PT3 197 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 CDCA3Q99618 268 aaPredicted RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 FAM213AQ9BRX8 229 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TEX13AQ9BXU3 409 aaPredicted RBP4.69□□□□□ -1.66
UPF3B-203ENST00000478840 SLC39A8Q9C0K1 460 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 EVA1AQ9H8M9 152 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 KCNMB3Q9NPA1 279 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TAS2R3Q9NYW6 316 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 UBQLN2Q9UHD9 624 aa4.69□□□□□ -1.66
UPF3B-203ENST00000478840 TRBV5-5A0A0J9YX44 114 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 ANTXRLA6NF34 631 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 OVOL3O00110 214 aa4.68□□□□□ -1.66
UPF3B-203ENST00000478840 CCL24O00175 119 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 625.5 ms