RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 VPS11Q9H270 941 aa17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 KCNK9Q9NPC2 374 aa17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 DCDC2Q9UHG0 476 aa17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 TSR3Q9UJK0 312 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 MED16Q9Y2X0 877 aa17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 ACOT9Q9Y305 439 aa17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 PCDHGA9Q9Y5G4 932 aaKnown RBP17.27■□□□□ 0.36
SQSTM1-204ENST00000453046 E5RI56 91 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 H3BMH7 237 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 NIPSNAP2O75323 286 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 C1orf105O95561 183 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 PDGFAP04085 211 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 ZNF37AP17032 561 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 CHRM3P20309 590 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 ALAS2P22557 587 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 FOLR3P41439 243 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 SKIV2L2P42285 1042 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 BDKRB1P46663 353 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 ZNF460Q14592 562 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 TSNAXIP1Q2TAA8 658 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 ZC3H12BQ5HYM0 836 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 TBC1D1Q86TI0 1168 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 MCATQ8IVS2 390 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 ZBTB2Q8N680 514 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 DLG3Q92796 817 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 FAM136AQ96C01 138 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 GBP5Q96PP8 586 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 GPAMQ9HCL2 828 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 KLHL42Q9P2K6 505 aa17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 TRMT6Q9UJA5 497 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 RUVBL2Q9Y230 463 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 PTRH2Q9Y3E5 179 aaKnown RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 UBR5O95071 2799 aaPredicted RBP17.26■□□□□ 0.35
SQSTM1-204ENST00000453046 NBASA2RRP1 2371 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 A6NL46 340 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 GRIA3P42263 894 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 ARSFP54793 590 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 MLLT10P55197 1068 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 TIAL1Q01085 375 aaKnown RBP eCLIP17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 ATP1A4Q13733 1029 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 SSPNQ14714 243 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 NKAIN1Q4KMZ8 207 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 FIGLAQ6QHK4 219 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 TTLL10Q6ZVT0 673 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 CD200R1Q8TD46 325 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 TCP10LQ8TDR4 215 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 DENND1AQ8TEH3 1009 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 IP6K3Q96PC2 410 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 GPR21Q99679 349 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 GRID1Q9ULK0 1009 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 ZNF451Q9Y4E5 1061 aa17.25■□□□□ 0.35
SQSTM1-204ENST00000453046 TTLL8A6PVC2 850 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 POLR3GO15318 223 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 KLF7O75840 302 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 CHN1P15882 459 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 RPA3P35244 121 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 CLCN7P51798 805 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 IRF9Q00978 393 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 FCRL6Q6DN72 434 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 ATCAYQ86WG3 371 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 CENPLQ8N0S6 344 aaPredicted RBP17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 ANKRD42Q8N9B4 389 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 ZUFSPQ96AP4 578 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 UBXN10Q96LJ8 280 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 MLXIPLQ9NP71 852 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 MID2Q9UJV3 735 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 PLLPQ9Y342 182 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 PCDHGB7Q9Y5F8 929 aa17.24■□□□□ 0.35
SQSTM1-204ENST00000453046 EIF3FO00303 357 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 PEX12O00623 359 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 KLHL2O95198 593 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 FKBP9O95302 570 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 LTA4HP09960 611 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 MPP2Q14168 576 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 FAM83EQ2M2I3 478 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 TTLL9Q3SXZ7 439 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 CCDC153Q494R4 210 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 CCSMST1Q4G0I0 132 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 TCTE1Q5JU00 501 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 KLC3Q6P597 504 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 NKAPQ8N5F7 415 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 EFCAB3Q8N7B9 438 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 TTC29Q8NA56 475 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 FDCSPQ8NFU4 85 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 OR2Y1Q8NGV0 311 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 GIMAP7Q8NHV1 300 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 KCTD4Q8WVF5 259 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 FER1L6-AS2Q96M78 137 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 MIPEPQ99797 713 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 INTS9Q9NV88 658 aaKnown RBP17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 GPR83Q9NYM4 423 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 SPATA7Q9P0W8 599 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 DHRS7Q9Y394 339 aa17.23■□□□□ 0.35
SQSTM1-204ENST00000453046 MED13Q9UHV7 2174 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 A0A1B0GX78 115 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 CCDC189A1A4V9 331 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 KRT87PA6NCN2 255 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 TARM1B6A8C7 271 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 DPM1O60762 260 aa17.22■□□□□ 0.35
SQSTM1-204ENST00000453046 SNRNP200O75643 2136 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms