RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 RFT1Q96AA3 541 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 RGMAQ96B86 450 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 HTATIP2Q9BUP3 242 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 SRMSQ9H3Y6 488 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 TREM1Q9NP99 234 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 CYTH4Q9UIA0 394 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 SLC22A14Q9Y267 594 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 HCN4Q9Y3Q4 1203 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 CMAHPQ9Y471 501 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 NFAT5O94916 1531 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 PRSS51A0A1B0GVH4 220 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 C9IYK1 514 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 GNB5O14775 395 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 SNAPC5O75971 98 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 IFNA21P01568 189 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 EBLN1P0CF75 366 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 FGF3P11487 239 aaPredicted RBP7.57□□□□□ -1.2
NEDD9-204ENST00000448183 F8A1P23610 371 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 GJA9P57773 515 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 DNAJB13P59910 316 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 BTN3A2P78410 334 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 RPL6Q02878 288 aaKnown RBP7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF33AQ06730 810 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ST3GAL3Q11203 375 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ABCA11PQ4W5N1 156 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 PRAMEF14Q5SWL7 426 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 PRAMEF13Q5VWM6 474 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 NAPRTQ6XQN6 538 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 GOLGA7Q7Z5G4 137 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 SYVN1Q86TM6 617 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF598Q86UK7 904 aaKnown RBP7.57□□□□□ -1.2
NEDD9-204ENST00000448183 MARVELD2Q8N4S9 558 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 FAM46DQ8NEK8 389 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 CCDC54Q8NEL0 328 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 OR2AJ1Q8NGZ0 328 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 TMEM80Q96HE8 168 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 MUS81Q96NY9 551 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 YIPF4Q9BSR8 244 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 GTPBP2Q9BX10 602 aaKnown RBP7.57□□□□□ -1.2
NEDD9-204ENST00000448183 SUV39H2Q9H5I1 410 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ENAMQ9NRM1 1142 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 ST14Q9Y5Y6 855 aa7.57□□□□□ -1.2
NEDD9-204ENST00000448183 INMT-MINDY4F8WBC2 141 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CCL16O15467 120 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CSN2P05814 226 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 FAM163BP0C2L3 166 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF20P17024 532 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 FSHRP23945 695 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 EIF2S3P41091 472 aaKnown RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 GALNT2Q10471 571 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 KCNAB2Q13303 367 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 MOGSQ13724 837 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 FAM189A2Q15884 450 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 KLHL26Q53HC5 615 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 RAB12Q6IQ22 244 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 NCCRP1Q6ZVX7 275 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 GALNT7Q86SF2 657 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SNX29P2Q8IUI4 249 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SLC22A15Q8IZD6 547 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF366Q8N895 744 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 NFKBIDQ8NI38 313 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CREB3L1Q96BA8 519 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CMTM7Q96FZ5 175 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CYP2S1Q96SQ9 504 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 FBRSL1Q9HCM7 1045 aaKnown RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 COPS7AQ9UBW8 275 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 MSRAQ9UJ68 235 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 HEBP2Q9Y5Z4 205 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 M0R2N6 131 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 WNT9AO14904 365 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SEPT4O43236 478 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 DFNA5O60443 496 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CBSLP0DN79 551 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 C7P10643 843 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 ERP29P30040 261 aaKnown RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CBSP35520 551 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 DGKGP49619 791 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 MLLT6P55198 1093 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SLC3A1Q07837 685 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 GFOD2Q3B7J2 385 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CARD16Q5EG05 197 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SH3D19Q5HYK7 790 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CEACAM20Q6UY09 585 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 LYSMD3Q7Z3D4 306 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 NPAS3Q8IXF0 933 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 LRCH3Q96II8 777 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 NEUROD4Q9HD90 331 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 TIGARQ9NQ88 270 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 PLCL2Q9UPR0 1127 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 AURKAO14965 403 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 ZNF208O43345 1280 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 TLL1O43897 1013 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 RFPL1O75677 317 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 EOMESO95936 686 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 KLK1P06870 262 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 CHRM1P11229 460 aaPredicted RBP7.56□□□□□ -1.2
NEDD9-204ENST00000448183 RPS3P23396 243 aaKnown RBP eCLIP7.56□□□□□ -1.22e-6■■■□□ 17.8
NEDD9-204ENST00000448183 CSKP41240 450 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 STC1P52823 247 aa7.56□□□□□ -1.2
NEDD9-204ENST00000448183 SEMA3AQ14563 771 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms