RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 NR6A1Q15406 480 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 TRIP13Q15645 432 aaPredicted RBP7.4□□□□□ -1.23
CD44-211ENST00000442151 CYP1B1Q16678 543 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 EIF2S3LQ2VIR3 472 aaKnown RBP7.4□□□□□ -1.23
CD44-211ENST00000442151 SPANXN3Q5MJ09 141 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 ATG9BQ674R7 924 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 ZNF470Q6ECI4 717 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 CES3Q6UWW8 571 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 CENPUQ71F23 418 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 COX15Q7KZN9 410 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 FAM20CQ8IXL6 584 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 Q8NA96 180 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 OR11G2Q8NGC1 345 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 ACTRT1Q8TDG2 376 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 HAS2Q92819 552 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 NRTNQ99748 197 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 TUBB6Q9BUF5 446 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 ACAT2Q9BWD1 397 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 DRC3Q9H069 523 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 PARVBQ9HBI1 364 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 SLC22A11Q9NSA0 550 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 ASF1BQ9NVP2 202 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 PCYOX1Q9UHG3 505 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 FBXO5Q9UKT4 447 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 MAU2Q9Y6X3 613 aa7.4□□□□□ -1.23
CD44-211ENST00000442151 A0A1W2PPV9 198 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 SYNDIG1LA6NDD5 238 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 ARHGEF33A8MVX0 844 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 MAN1A2O60476 641 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 TCP1P17987 556 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 PGAM1P18669 254 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 MCM3P25205 808 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 ARNTP27540 789 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CXCR5P32302 372 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 SLC26A3P40879 764 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CLCN7P51798 805 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CASP6P55212 293 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 KLC1Q07866 573 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 ACTN3Q08043 901 aaPredicted RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 ABHD17BQ5VST6 288 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 FAM69BQ5VUD6 431 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 FRMPD2BQ6IN97 320 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 ZNF425Q6IV72 752 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 MAMDC2Q7Z304 686 aaPredicted RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 GALNT7Q86SF2 657 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CAND1Q86VP6 1230 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 C17orf64Q86WR6 236 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 REXO1L1PQ8IX06 675 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 HORMAD2Q8N7B1 307 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 C7orf57Q8NEG2 295 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 FAR1Q8WVX9 515 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CNDP1Q96KN2 507 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 ZNF354BQ96LW1 612 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 MAGEB10Q96LZ2 347 aaPredicted RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 SERPINB12Q96P63 405 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 BARD1Q99728 777 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 AARSD1Q9BTE6 412 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 RNF32Q9H0A6 362 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.39□□□□□ -1.23
CD44-211ENST00000442151 ANKHQ9HCJ1 492 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 SUCOQ9UBS9 1254 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 CIDEBQ9UHD4 219 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 TAC3Q9UHF0 121 aa7.39□□□□□ -1.23
CD44-211ENST00000442151 NOVA2Q9UNW9 492 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 TLN1Q9Y490 2541 aaKnown RBP7.39□□□□□ -1.23
CD44-211ENST00000442151 LOC102723996A0A087X1L8 192 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 LOC105369274A0A096LPK9 316 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 LOC102723532A0A0G2JNH3 316 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 A0A1W2PQ72 361 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 IDSB3KWA1 339 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 GOLGA8KD6RF30 607 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 E7ENX8 843 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 GOLGA8TH3BQL2 631 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 CNOT3O75175 753 aaKnown RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 NSA2O95478 260 aaKnown RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 SLC16A8O95907 504 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 ENO2P09104 434 aaPredicted RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 HPDP32754 393 aaPredicted RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 AP1S2P56377 157 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 TAS2R50P59544 299 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 IL2P60568 153 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 TAP2Q03519 686 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 FASTKQ14296 549 aaKnown RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 EXT1Q16394 746 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 DUPD1Q68J44 220 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 CAPN13Q6MZZ7 669 aaPredicted RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 SUSD1Q6UWL2 747 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 CUZD1Q86UP6 607 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 KCNMB4Q86W47 210 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 OR4N4Q8N0Y3 316 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 PDIK1LQ8N165 341 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 NAT8LQ8N9F0 302 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 OR1N1Q8NGS0 311 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 LRRC39Q96DD0 335 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 OR2A5Q96R48 311 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 ZNF700Q9H0M5 742 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 ZNF160Q9HCG1 818 aa7.38□□□□□ -1.23
CD44-211ENST00000442151 FBXO6Q9NRD1 293 aaPredicted RBP7.38□□□□□ -1.23
CD44-211ENST00000442151 NSMCE4AQ9NXX6 385 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms