RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 AHRP35869 848 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SEPHS1P49903 392 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 NOVA1P51513 510 aaKnown RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 INHBCP55103 352 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 GFERP55789 205 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SH3BP2P78314 561 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PCDH1Q08174 1060 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 DDX39BQ13838 428 aaKnown RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 TCTE1Q5JU00 501 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CATSPEREQ5SY80 951 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FRG2Q64ET8 278 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FAM47EQ6ZV65 393 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CHSY3Q70JA7 882 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 PIP4P1Q86T03 277 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 TRIM73Q86UV7 250 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 SRFBP1Q8NEF9 429 aaKnown RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 OR52B6Q8NGF0 335 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 BAHD1Q8TBE0 780 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 TRAPPC9Q96Q05 1148 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CDK15Q96Q40 435 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FRG2BQ96QU4 278 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 CMKLR1Q99788 373 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 ZFYVE21Q9BQ24 234 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 RTKNQ9BST9 563 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 FAM53CQ9NYF3 392 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 ATXN7L1Q9ULK2 861 aaPredicted RBP9.7□□□□□ -0.86
CD44-207ENST00000425428 RNF11Q9Y3C5 154 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 U3KQA8 63 aa9.7□□□□□ -0.86
CD44-207ENST00000425428 ZFHX2Q9C0A1 2572 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 USP34Q70CQ2 3546 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 GMNCA6NCL1 334 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 H0YIV9 168 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 FFAR3O14843 346 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 SLC30A4O14863 429 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 GPR42O15529 346 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 SNNO75324 88 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 WFS1O76024 890 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 MYO1DO94832 1006 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ANKRD34CP0C6C1 535 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 HSD3B1P14060 373 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 HSD3B2P26439 372 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 VARSP26640 1264 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 PEBP1P30086 187 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 PIK3CBP42338 1070 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 STXBP1P61764 594 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 CSNK1G2P78368 415 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 SIM1P81133 766 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 REEP5Q00765 189 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 TRAF3Q13114 568 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ZRSR2Q15696 482 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 NDUFA9Q16795 377 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 NIPAL1Q6NVV3 410 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 RPS27LQ71UM5 84 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 SYVN1Q86TM6 617 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 BPHLQ86WA6 291 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 GBP7Q8N8V2 638 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 TTC29Q8NA56 475 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 AGBL5Q8NDL9 886 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 OR4K1Q8NGD4 311 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 WDR34Q96EX3 536 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 CMTM7Q96FZ5 175 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 NUDT22Q9BRQ3 303 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 CHRNA10Q9GZZ6 450 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ZNF768Q9H5H4 540 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 ZBTB26Q9HCK0 441 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ACSS2Q9NR19 701 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 CUEDC1Q9NWM3 386 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 GEMIN8Q9NWZ8 242 aaKnown RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 ADAM21Q9UKJ8 722 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ZNF490Q9ULM2 529 aaPredicted RBP9.69□□□□□ -0.86
CD44-207ENST00000425428 PLCL2Q9UPR0 1127 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 ASB1Q9Y576 335 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 KLK4Q9Y5K2 254 aa9.69□□□□□ -0.86
CD44-207ENST00000425428 A0A0J9YVX5 310 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 NTN3O00634 580 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 ZSCAN9O15535 394 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 ITM2AO43736 263 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 LYPLA1O75608 230 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 TGDSO95455 350 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 EIF2S1P05198 315 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 CHRNGP07510 517 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ST6GAL1P15907 406 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MPSTP25325 297 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 PTX3P26022 381 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 LSP1P33241 339 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 RAP1GDS1P52306 607 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ERVPABLB-1P60509 514 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MEF2AQ02078 507 aaPredicted RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 CSTF3Q12996 717 aaKnown RBP9.68□□□□□ -0.86
CD44-207ENST00000425428 SGO1Q5FBB7 561 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 SPDYAQ5MJ70 313 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MANEAQ5SRI9 462 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ACAD11Q709F0 780 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 FAM129CQ86XR2 697 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 GALNT15Q8N3T1 639 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 ZNF781Q8N8C0 355 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 DCBLD1Q8N8Z6 715 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 MFSD9Q8NBP5 474 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 OR8K5Q8NH50 307 aa9.68□□□□□ -0.86
CD44-207ENST00000425428 SLC13A3Q8WWT9 602 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms