RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 SLC7A6OSQ96CW6 309 aaPredicted RBP11.73□□□□□ -0.53
UBR4-205ENST00000417040 ZNF208O43345 1280 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SLITRK5O94991 958 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 H1F0P07305 194 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 HAGHLQ6PII5 290 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 PIAS4Q8N2W9 510 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 CASTOR1Q8WTX7 329 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 CNDP2Q96KP4 475 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 NSUN5Q96P11 429 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 TMEM246Q9BRR3 403 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 DPCDQ9BVM2 203 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 YTHDF1Q9BYJ9 559 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 MRTO4Q9UKD2 239 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 PADI3Q9ULW8 664 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 OR6C75A6NL08 312 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 FAM170BA6NMN3 283 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 C6orf47O95873 294 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 GRB7Q14451 532 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ASCC1Q8N9N2 400 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 THEM6Q8WUY1 208 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 FCRL3Q96P31 734 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 RNF208Q9H0X6 261 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 OR51I1Q9H343 314 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 MRPS30Q9NP92 439 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 CYTH4Q9UIA0 394 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZNF451Q9Y4E5 1061 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 GABRDO14764 452 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SSX5O60225 188 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 RAB36O95755 333 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 HOXC6P09630 235 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 AFF1P51825 1210 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 NCEH1Q6PIU2 408 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 CLEC20AQ6ZU45 233 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 GALNT13Q8IUC8 556 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 GPALPP1Q8IXQ4 340 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 OR2L2Q8NH16 312 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 GEMIN6Q8WXD5 167 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 C12orf66Q96MD2 445 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ADAP2Q9NPF8 381 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 KHNYNO15037 678 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 EEF1E1O43324 174 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 AKAP8O43823 692 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 TYROBPO43914 113 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 UQCRC1P31930 480 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 MAGEA8P43361 318 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 TUBA1BP68363 451 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZNF423Q2M1K9 1284 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ATAT1Q5SQI0 421 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 KIAA1614Q5VZ46 1190 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 TUBA1AQ71U36 451 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 TCEANCQ8N8B7 351 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SRFBP1Q8NEF9 429 aaKnown RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 SLCO2A1Q92959 643 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SAV1Q9H4B6 383 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 CENPMQ9NSP4 180 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 PAK1IP1Q9NWT1 392 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 VNN3Q9NY84 501 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 EDARQ9UNE0 448 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SLC38A8A6NNN8 435 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZNF878C9JN71 531 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 RLN2P04090 185 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZNF8P17098 575 aaPredicted RBP11.72□□□□□ -0.53
UBR4-205ENST00000417040 ADH7P40394 386 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZNF678Q5SXM1 525 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 LYSMD3Q7Z3D4 306 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SLC15A4Q8N697 577 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 OR2AJ1Q8NGZ0 328 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 SPPL2BQ8TCT7 592 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 TMIGD2Q96BF3 282 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 LRCH3Q96II8 777 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 FCRL5Q96RD9 977 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 TSSK6Q9BXA6 273 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 MFSD1Q9H3U5 465 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 USP29Q9HBJ7 922 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 ZIM2Q9NZV7 527 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 HCN2Q9UL51 889 aa11.72□□□□□ -0.53
UBR4-205ENST00000417040 MANBAO00462 879 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 IDSP22304 550 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 TUBG1P23258 451 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 NSG1P42857 185 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 GDI2P50395 445 aaKnown RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 RAB15P59190 212 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 RPS24P62847 133 aaKnown RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 MAP2K5Q13163 448 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 CEACAM20Q6UY09 585 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 ZNF557Q8N988 423 aaPredicted RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 TXNDC5Q8NBS9 432 aaKnown RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 THAP6Q8TBB0 222 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 UPF1Q92900 1129 aaKnown RBP eCLIP11.71□□□□□ -0.53
UBR4-205ENST00000417040 ZBED6CLQ96FA7 236 aaPredicted RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 TP63Q9H3D4 680 aaPredicted RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 LYARQ9NX58 379 aaKnown RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 MRPS33Q9Y291 106 aaKnown RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 ZNF510Q9Y2H8 683 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 PCDHGA11Q9Y5H2 935 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 SPATA31A6Q5VVP1 1343 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 MANSC4A6NHS7 340 aaPredicted RBP11.71□□□□□ -0.53
UBR4-205ENST00000417040 M0R233 179 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 ITGA10O75578 1167 aa11.71□□□□□ -0.53
UBR4-205ENST00000417040 PPM1BO75688 479 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms