RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 HBEGFQ99075 208 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 GABRG3Q99928 467 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 CNTNAP3Q9BZ76 1288 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 ACPTQ9BZG2 426 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 SLC6A17Q9H1V8 727 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 FAM83DQ9H4H8 585 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 VAPAQ9P0L0 249 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 FBXO10Q9UK96 956 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 FADS3Q9Y5Q0 445 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 BPTFQ12830 3046 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 ELOVL7A1L3X0 281 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 C4orf47A7E2U8 309 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 PDLIM1O00151 329 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 PLOD2O00469 737 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 EI24O14681 340 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 KHNYNO15037 678 aaKnown RBP14.33□□□□□ -0.12
USP4-203ENST00000415188 PDYNP01213 254 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 POLR2EP19388 210 aaKnown RBP14.33□□□□□ -0.12
USP4-203ENST00000415188 NDUFV2P19404 249 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 S100A3P33764 101 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 CSTF3Q12996 717 aaKnown RBP14.33□□□□□ -0.12
USP4-203ENST00000415188 TMEM259Q4ZIN3 620 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 SPANXN4Q5MJ08 99 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 USP51Q70EK9 711 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 MICU2Q8IYU8 434 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 TMEM132CQ8N3T6 1108 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 SVOPLQ8N434 492 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 DDHD1Q8NEL9 900 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 ASZ1Q8WWH4 475 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 ATL1Q8WXF7 558 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 OR52E6Q96RD3 313 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 CPPED1Q9BRF8 314 aaPredicted RBP14.33□□□□□ -0.12
USP4-203ENST00000415188 ZSCAN5AQ9BUG6 496 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 FARSBQ9NSD9 589 aaKnown RBP14.33□□□□□ -0.12
USP4-203ENST00000415188 TMEM74BQ9NUR3 256 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 DKK3Q9UBP4 350 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 TMPRSS11EQ9UL52 423 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 MAPRE3Q9UPY8 281 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 ERVW-1Q9UQF0 538 aa14.33□□□□□ -0.12
USP4-203ENST00000415188 C16orf96A6NNT2 1141 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 UPK3BL1B0FP48 263 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 UPK3BL2E5RIL1 263 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 ZNF701M0R085 212 aaPredicted RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 BNIP3LO60238 219 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 SLCO2B1O94956 709 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 GSTM1P09488 218 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 JUPP14923 745 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 TTKP33981 857 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 NNMTP40261 264 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 ALDH3A2P51648 485 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 ESRRGP62508 458 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 ADARB1P78563 741 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 GSTM4Q03013 218 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 PCDH1Q08174 1060 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 HSPA14Q0VDF9 509 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 MYBPC3Q14896 1274 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 RBBP5Q15291 538 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 SGO1Q5FBB7 561 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 LIPJQ5W064 366 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 SDE2Q6IQ49 451 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 SUSD1Q6UWL2 747 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 MBOAT1Q6ZNC8 495 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 Q6ZVU0 165 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 DPPA4Q7L190 304 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 ADIPOR2Q86V24 386 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 CALHM3Q86XJ0 350 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 CHST14Q8NCH0 376 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 OR2A12Q8NGT7 310 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 PNPT1Q8TCS8 783 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 CYGBQ8WWM9 190 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 STARD8Q92502 1023 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 SDCCAG3Q96C92 435 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 DTNBP1Q96EV8 351 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 VPS50Q96JG6 964 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 SEPHS2Q99611 448 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 THUMPD3Q9BV44 507 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 PAIP1Q9H074 479 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 CD93Q9NPY3 652 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 DNAJB9Q9UBS3 223 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 USP22Q9UPT9 525 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 CEPT1Q9Y6K0 416 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 GON4LQ3T8J9 2241 aa14.32□□□□□ -0.12
USP4-203ENST00000415188 TPRP12270 2363 aaKnown RBP14.32□□□□□ -0.12
USP4-203ENST00000415188 IGHV1OR15-9A0A0B4J2B8 117 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 MYOCOSA0A1B0GUC4 107 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CCDC160A6NGH7 325 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CXCR6O00574 342 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 WNT9AO14904 365 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ALBP02768 609 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ASLP04424 464 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 HSD3B1P14060 373 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 ITPKAP23677 461 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 HSD3B2P26439 372 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 TRPC1P48995 793 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CDK9P50750 372 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 C21orf58P58505 322 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 RPL6Q02878 288 aaKnown RBP14.31□□□□□ -0.12
USP4-203ENST00000415188 ABRQ12979 859 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 DAG1Q14118 895 aa14.31□□□□□ -0.12
USP4-203ENST00000415188 CPSF6Q16630 551 aaKnown RBP eCLIP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms