RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GPR18Q14330 331 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 RBBP5Q15291 538 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 ZNF423Q2M1K9 1284 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 COQ5Q5HYK3 327 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 C10orf62Q5T681 223 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 C8orf82Q6P1X6 216 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PGM2L1Q6PCE3 622 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 HACD2Q6Y1H2 254 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 BNC2Q6ZN30 1099 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 RIPOR1Q6ZS17 1223 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PARP9Q8IXQ6 854 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 NAGSQ8N159 534 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 FBXL6Q8N531 539 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 KRTCAP2Q8N6L1 136 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 ANKRD53Q8N9V6 530 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 OR4K1Q8NGD4 311 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 WDR60Q8WVS4 1066 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 C11orf24Q96F05 449 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 TSSK3Q96PN8 268 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 DPY30Q9C005 99 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 MRPS30Q9NP92 439 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PRMT8Q9NR22 394 aaPredicted RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 POT1Q9NUX5 634 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 OR6C2Q9NZP2 312 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 PRPF19Q9UMS4 504 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 USP34Q70CQ2 3546 aa13.51□□□□□ -0.25
GPNMB-203ENST00000409458 SNRNP200O75643 2136 aaKnown RBP13.51□□□□□ -0.25
GPNMB-203ENST00000409458 FEZF1A0PJY2 475 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 BTN3A3O00478 584 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 TGFB1P01137 390 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 TDGF1P13385 188 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PIK3CBP42338 1070 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 FNTBP49356 437 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 DGKQP52824 942 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 NXPH1P58417 271 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PSME3P61289 254 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CYP4F2P78329 520 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 RAE1P78406 368 aaKnown RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 KPNB1Q14974 876 aaKnown RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PLCL1Q15111 1095 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 TLR1Q15399 786 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PAGE3Q5JUK9 113 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ADCK2Q7Z695 626 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ADGRF3Q8IZF5 1079 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 FBXW8Q8N3Y1 598 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 C1orf52Q8N6N3 182 aaKnown RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PCYOX1LQ8NBM8 494 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 GPR156Q8NFN8 814 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 OR2L3Q8NG85 312 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SLC37A2Q8TED4 501 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 DNASE2BQ8WZ79 361 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ZBTB18Q99592 522 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SLC39A3Q9BRY0 314 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 DUSP15Q9H1R2 295 aaPredicted RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SRMSQ9H3Y6 488 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CLMPQ9H6B4 373 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 IL1RL2Q9HB29 575 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CPNE7Q9UBL6 633 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 RUVBL1Q9Y265 456 aaKnown RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 HEATR5BQ9P2D3 2071 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 KIR2DS5A0A0G2JLQ3 304 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 A0A0G2JNG1 304 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 KIR2DS3K7RE56 304 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 FXYD1O00168 92 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SAP18O00422 153 aaKnown RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CIB2O75838 187 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 VIPP01282 170 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 XRCC1P18887 633 aaPredicted RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CXCR2P25025 360 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 HOXA6P31267 233 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 MTTPP55157 894 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CLDN8P56748 225 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PHEXP78562 749 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ACSM2AQ08AH3 577 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 KIR2DS5Q14953 304 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SPIN4Q56A73 249 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ACSM2BQ68CK6 577 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 SLC2A7Q6PXP3 512 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 HPS6Q86YV9 775 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PLD3Q8IV08 490 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ZDHHC1Q8WTX9 485 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CHTF18Q8WVB6 975 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 EDAQ92838 391 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 ROPN1LQ96C74 230 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CDRT15Q96T59 188 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 TWSG1Q9GZX9 223 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 RHBGQ9H310 441 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 OR51B5Q9H339 312 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 LEF1Q9UJU2 399 aaPredicted RBP13.5□□□□□ -0.25
GPNMB-203ENST00000409458 CROTQ9UKG9 612 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 PPT2Q9UMR5 302 aa13.5□□□□□ -0.25
GPNMB-203ENST00000409458 THADAQ6YHU6 1953 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 OR5K4A6NMS3 321 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 ISM1B1AKI9 464 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 B4DGG1 531 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 LRATO95237 230 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 CCNDBP1O95273 360 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 ATP6V1G2O95670 118 aa13.49□□□□□ -0.25
GPNMB-203ENST00000409458 TBX6O95947 436 aaPredicted RBP13.49□□□□□ -0.25
GPNMB-203ENST00000409458 HOXB3P14651 431 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms