RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 NR5A2O00482 541 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF185O15231 689 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PRAMEF10O60809 474 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CRTAPO75718 401 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CPA3P15088 417 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 TCTEX1D2Q8WW35 142 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PHF12Q96QT6 1004 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CPXM1Q96SM3 734 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CWH43Q9H720 699 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PTTG2Q9NZH5 202 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 GRIN2DO15399 1336 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 BRWD3Q6RI45 1802 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 NSG1A0A0A6YYJ2 146 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 KANTRA0A1W2PQU2 76 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MEIS3P2A8K0S8 358 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CENPBD1B2RD01 187 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CLDN25C9JDP6 229 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 PDPK1O15530 556 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 C8GP07360 202 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 NCK1P16333 377 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CNTFP26441 200 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ERP29P30040 261 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 HOXA11P31270 313 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 DLSTP36957 453 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 LSM3P62310 102 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SOX4Q06945 474 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF267Q14586 743 aaPredicted RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 HLA-BQ31612 363 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 BTBD16Q32M84 506 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 EIF5AL1Q6IS14 154 aaKnown RBP7.1□□□□□ -1.27
SCN9A-202ENST00000409435 UBR7Q8N806 425 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 OR10H5Q8NGA6 315 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 SHISA4Q96DD7 197 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 FAM84AQ96KN4 292 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 MCMBPQ9BTE3 642 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 ERGIC3Q9Y282 383 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 DHRS7Q9Y394 339 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 AP1M2Q9Y6Q5 423 aa7.1□□□□□ -1.27
SCN9A-202ENST00000409435 CASP8AP2Q9UKL3 1982 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 SCN11AQ9UI33 1791 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CLCA1A8K7I4 914 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 NDUFS4O43181 175 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ATP1B2P14415 290 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 RPL26P61254 145 aaKnown RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 HTRA4P83105 476 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 RAPSNQ13702 412 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 LRP8Q14114 963 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 FAM153CQ494X1 144 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TEX44Q53QW1 395 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 SAMD4BQ5PRF9 694 aaKnown RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 MED27Q6P2C8 311 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 XKRXQ6PP77 449 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DHDDSQ86SQ9 333 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 KLF6Q99612 283 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CPNE1Q99829 537 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 GRHL1Q9NZI5 618 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PTGFRNQ9P2B2 879 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 AP3M1Q9Y2T2 418 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 POLR3HQ9Y535 204 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 WASF2Q9Y6W5 498 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ARGFXA6NJG6 315 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ZSCAN5BA6NJL1 495 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 OR2AT4A6NND4 320 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 SOCS5O75159 536 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 OR7A10O76100 309 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 GIMD1P0DJR0 217 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DGKQP52824 942 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 EPHA4P54764 986 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 NOMO3P69849 1222 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 MGAT3Q09327 533 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 RIPK1Q13546 671 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 MFSD7Q6UXD7 560 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PLCZ1Q86YW0 608 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF100Q8IYN0 542 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PNPLA1Q8N8W4 532 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF527Q8NB42 609 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 BPIFB6Q8NFQ5 453 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DAZLQ92904 295 aaKnown RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PHF21BQ96EK2 531 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CHFRQ96EP1 664 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 MIPEPQ99797 713 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TCEAL7Q9BRU2 100 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CDADC1Q9BWV3 514 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CLN6Q9NWW5 311 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 UBR2Q8IWV8 1755 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PTGESO14684 152 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CPNE6O95741 557 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CD70P32970 193 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 GRK5P34947 590 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 COILP38432 576 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 PNLIPRP1P54315 467 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CDKL1Q00532 357 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 CES3Q6UWW8 571 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ARPINQ7Z6K5 226 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ZNF761Q86XN6 746 aaPredicted RBP7.09□□□□□ -1.27
SCN9A-202ENST00000409435 LIX1LQ8IVB5 337 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 DNAJB14Q8TBM8 379 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 ACTRT2Q8TDY3 377 aa7.09□□□□□ -1.27
SCN9A-202ENST00000409435 TNFAIP8L1Q8WVP5 186 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms