RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 EMILIN2Q9BXX0 1053 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 PCDHGA3Q9Y5H0 932 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 PRAMEF25A6NGN4 478 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 SLC38A8A6NNN8 435 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 STC2O76061 302 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 EBLN1P0CF75 366 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 AKR1A1P14550 325 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 TRPC1P48995 793 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 RGS4P49798 205 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 BOP1Q14137 746 aaKnown RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 GPR26Q8NDV2 337 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 ZNF675Q8TD23 568 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 MYLIPQ8WY64 445 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 GTPBP3Q969Y2 492 aaKnown RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 ZNF486Q96H40 463 aaPredicted RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 FAM193BQ96PV7 902 aaPredicted RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 SDHCQ99643 169 aaPredicted RBP20.3■□□□□ 0.84
CTCF-202ENST00000401394 BEX2Q9BXY8 128 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 FBXL12Q9NXK8 326 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 OGDHLQ9ULD0 1010 aa20.3■□□□□ 0.84
CTCF-202ENST00000401394 CASP8AP2Q9UKL3 1982 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 EVPLLA8MZ36 301 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 ASNA1O43681 348 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 NUAK1O60285 661 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 GCM2O75603 506 aaPredicted RBP20.29■□□□□ 0.84
CTCF-202ENST00000401394 PROX2Q3B8N5 592 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 ARMCX4Q5H9R4 360 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 NOXRED1Q6NXP6 359 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 COPS8Q99627 209 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 PLSCR3Q9NRY6 295 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 UGT2A1Q9Y4X1 527 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 MFN2O95140 757 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 ETHE1O95571 254 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 CD22P20273 847 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 DGKAP23743 735 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 GAB1Q13480 694 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 COX20Q5RI15 118 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 SYT12Q8IV01 421 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 NAGSQ8N159 534 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 GPR156Q8NFN8 814 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 NTMT1Q9BV86 223 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 DNMT3LQ9UJW3 386 aa20.29■□□□□ 0.84
CTCF-202ENST00000401394 TFECO14948 347 aaPredicted RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 TBL1XO60907 577 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 SCN2BO60939 215 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 CCNKO75909 580 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 ADORA3P0DMS8 318 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 COX7A2P14406 83 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 SLC11A2P49281 568 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 MAD2L1Q13257 205 aaPredicted RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 GANABQ14697 944 aaKnown RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 BCL7AQ4VC05 210 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 WDR53Q7Z5U6 358 aaPredicted RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 BCDIN3DQ7Z5W3 292 aaKnown RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 C7orf34Q96L11 122 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 ACSL6Q9UKU0 697 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 WWP2O00308 870 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 LRRTM2O43300 516 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 IGFBP1P08833 259 aaPredicted RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 KCNJ10P78508 379 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 RING1Q06587 406 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 ST3GAL4Q11206 333 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 TAF1CQ15572 869 aaPredicted RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 P2RY13Q9BPV8 354 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 OLA1Q9NTK5 396 aaKnown RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 CCDC88CQ9P219 2028 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 MAGEB17A8MXT2 336 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 FAM47E-STBD1D6RA91 191 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 DNAJB5O75953 348 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 KRT6AP02538 564 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 KRT6BP04259 564 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 FEN1P39748 380 aaKnown RBP20.28■□□□□ 0.84
CTCF-202ENST00000401394 CSKP41240 450 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 PIK3CBP42338 1070 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 KRT6CP48668 564 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 B4GALNT1Q00973 533 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 SMARCB1Q12824 385 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 MTA1Q13330 715 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 MED22Q15528 200 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 CYP2U1Q7Z449 544 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 OR4K1Q8NGD4 311 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 SAMD11Q96NU1 681 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 ZNF226Q9NYT6 803 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 FZD4Q9ULV1 537 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 MAN2B2Q9Y2E5 1009 aa20.28■□□□□ 0.84
CTCF-202ENST00000401394 H7C0S8 307 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 ACRV1P26436 265 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 GRK3P35626 688 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 CDH12P55289 794 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 TAB1Q15750 504 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 UBE2R2Q712K3 238 aaPredicted RBP20.27■□□□□ 0.84
CTCF-202ENST00000401394 RBFAQ8N0V3 343 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 MYO19Q96H55 970 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 TXNDC15Q96J42 360 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 TPT1P8Q9HAU6 139 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 PSORS1C1Q9UIG5 152 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 TMA7Q9Y2S6 64 aaKnown RBP20.27■□□□□ 0.84
CTCF-202ENST00000401394 PCDHGB6Q9Y5F9 930 aa20.27■□□□□ 0.84
CTCF-202ENST00000401394 CLDN24A6NM45 220 aa20.27■□□□□ 0.83
CTCF-202ENST00000401394 FZD6O60353 706 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms