RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PRAMEF13Q5VWM6 474 aa17.96■□□□□ 0.47
USP48-204ENST00000400301 RSPO2Q6UXX9 243 aaPredicted RBP17.96■□□□□ 0.47
USP48-204ENST00000400301 TMEM25Q86YD3 366 aa17.96■□□□□ 0.47
USP48-204ENST00000400301 TEX37Q96LM6 180 aa17.96■□□□□ 0.47
USP48-204ENST00000400301 PHPT1Q9NRX4 125 aaPredicted RBP17.96■□□□□ 0.47
USP48-204ENST00000400301 TMEM45AQ9NWC5 275 aa17.96■□□□□ 0.47
USP48-204ENST00000400301 B4GAT1O43505 415 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 PRMT3O60678 531 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 ALOX5P09917 674 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 NR2F6P10588 404 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 KELP23276 732 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 TMBIM6P55061 237 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 TIGD6Q17RP2 521 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 NFKBIDQ8NI38 313 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 GSTK1Q9Y2Q3 226 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 B4GALT3O60512 393 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 C6orf47O95873 294 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 DGKEP52429 567 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 CBLBQ13191 982 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 SLC36A3Q495N2 470 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 OXR1Q8N573 874 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 NETO1Q8TDF5 533 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 TADA1Q96BN2 335 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 SLC12A9Q9BXP2 914 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 PALMDQ9NP74 551 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 CFAP20Q9Y6A4 193 aaKnown RBP17.95■□□□□ 0.46
USP48-204ENST00000400301 FAM25AB3EWG3 89 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 FAM25CB3EWG5 89 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 FAM25GB3EWG6 89 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 SLC5A2P31639 672 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 ACVR1Q04771 509 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 FOXB2Q5VYV0 432 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 FRS2Q8WU20 508 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 GLYATL1Q969I3 302 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 MYEOVQ96EZ4 313 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 SLC38A2Q96QD8 506 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 TUBA1CQ9BQE3 449 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 BRINP2Q9C0B6 783 aa17.95■□□□□ 0.46
USP48-204ENST00000400301 GRXCR2A6NFK2 248 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 MMP20O60882 483 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 EIF2S1P05198 315 aaKnown RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 NOS3P29474 1203 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.94■□□□□ 0.46
USP48-204ENST00000400301 VTCN1Q7Z7D3 282 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CLECL1Q8IZS7 167 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 FCGR1BQ92637 280 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 HPS1Q92902 700 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TRIT1Q9H3H1 467 aaKnown RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 SSR3Q9UNL2 185 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 IL12AP29459 219 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 DCTP40126 519 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 MAGEA10P43363 369 aaPredicted RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 TM4SF4P48230 202 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CD47Q08722 323 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TRIQKQ629K1 86 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 RNF111Q6ZNA4 994 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TICAM1Q8IUC6 712 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 MMAAQ8IVH4 418 aaKnown RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 TCEAL8Q8IYN2 117 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 DPP10Q8N608 796 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 WFIKKN2Q8TEU8 576 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 PDLIM5Q96HC4 596 aaKnown RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 SLC22A12Q96S37 553 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 PKP4Q99569 1192 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 SCAMP1O15126 338 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 SLC16A5O15375 505 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 PDPK1O15530 556 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TPST2O60704 377 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CCL5P13501 91 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CTSOP43234 321 aaPredicted RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 OR1E2P47887 323 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 MVKQ03426 396 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 KCNC3Q14003 757 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CARTPTQ16568 116 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CBARPQ8N350 705 aaPredicted RBP17.94■□□□□ 0.46
USP48-204ENST00000400301 TEX47Q8TBZ9 253 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CTPS2Q9NRF8 586 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 OLAHQ9NV23 265 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 PRKAB1Q9Y478 270 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 ZNF451Q9Y4E5 1061 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TRBC2A0A5B9 178 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 AP3D1O14617 1153 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 HLA-EP13747 358 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 GRIA2P42262 883 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 SUOXP51687 545 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 CLCN7P51798 805 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TMC5Q6UXY8 1006 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TMIGD1Q6UXZ0 262 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 GTF2H4Q92759 462 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TAMM41Q96BW9 452 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 SPHK2Q9NRA0 654 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 GPRC5BQ9NZH0 403 aa17.94■□□□□ 0.46
USP48-204ENST00000400301 TRIM43BA6NCK2 446 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 MITFO75030 526 aaPredicted RBP17.93■□□□□ 0.46
USP48-204ENST00000400301 TAS2R41P59536 307 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 DSTNP60981 165 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 ZNF763Q0D2J5 394 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 HMBOX1Q6NT76 420 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 TRAF7Q6Q0C0 670 aa17.93■□□□□ 0.46
USP48-204ENST00000400301 UTS2BQ765I0 119 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms