RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 ATG9BQ674R7 924 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ERICH5Q6P6B1 374 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SBSNQ6UWP8 590 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TMPRSS11BQ86T26 416 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ZZZ3Q8IYH5 903 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 FAM9CQ8IZT9 166 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 NLGN4XQ8N0W4 816 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 PDPRQ8NCN5 879 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 OVCA2Q8WZ82 227 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TADA1Q96BN2 335 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 RNF208Q9H0X6 261 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 MIR1-1HGQ9H1L0 117 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TRIM64A6NGJ6 449 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TRIM64BA6NI03 449 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SNRNP200O75643 2136 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 HPRP00739 348 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 HSD3B2P26439 372 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 VIPR1P32241 457 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 OR1E2P47887 323 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 GRIK2Q13002 908 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 DOC2AQ14183 400 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 CTU2Q2VPK5 515 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 RSBN1Q5VWQ0 802 aaPredicted RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 DEF8Q6ZN54 512 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 CEP68Q76N32 757 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 LRRC70Q7Z2Q7 622 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 HSD11B1LQ7Z5J1 315 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SETD6Q8TBK2 473 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 BRINP2Q9C0B6 783 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 RMI1Q9H9A7 625 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 PPT2Q9UMR5 302 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 PCDHB14Q9Y5E9 798 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 WNT6Q9Y6F9 365 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 H3BNC9 293 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SOD2P04179 222 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 MSL3P1P0C860 447 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 PIM1P11309 404 aaPredicted RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 GPC1P35052 558 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 BMXP51813 675 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 CTBSQ01459 385 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TLE2Q04725 743 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ABHD18Q0P651 414 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 EIF4EBP2Q13542 120 aaPredicted RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 MYBPC3Q14896 1274 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 CXorf57Q6NSI4 855 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 MED27Q6P2C8 311 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 VTCN1Q7Z7D3 282 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 IGFN1Q86VF2 1251 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 KLHDC8BQ8IXV7 354 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SMYD1Q8NB12 490 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 FAR1Q8WVX9 515 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 HTRA1Q92743 480 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 YME1L1Q96TA2 773 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SORBS1Q9BX66 1292 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 AMBRA1Q9C0C7 1298 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TPT1P8Q9HAU6 139 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 DYRK4Q9NR20 520 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 THG1LQ9NWX6 298 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 MTRRQ9UBK8 725 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 SHROOM3Q8TF72 1996 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 A0A096LPI6 279 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 LOC100506127A0A0U1RQW1 187 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 E7EQ34 232 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 KLK8O60259 260 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 POP4O95707 220 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 LAMP1P11279 417 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ETV3P41162 512 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ARHGEF6Q15052 776 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 DPY19L3Q6ZPD9 716 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 WDR36Q8NI36 951 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ASZ1Q8WWH4 475 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 GATAD2BQ8WXI9 593 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 S100PBPQ96BU1 408 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 OTUB1Q96FW1 271 aaPredicted RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 WRAP53Q9BUR4 548 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 OSBPL10Q9BXB5 764 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TMEM121BQ9BXQ6 578 aaPredicted RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 RBM38Q9H0Z9 239 aaKnown RBP4.78□□□□□ -1.64
SMAD4-202ENST00000398417 VNN3Q9NY84 501 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 ABCD2Q9UBJ2 740 aa4.78□□□□□ -1.64
SMAD4-202ENST00000398417 TRBV23OR9-2A0A075B6M9 112 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 PSMD11O00231 422 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 C8GP07360 202 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 PABPC1P11940 636 aaKnown RBP4.78□□□□□ -1.65
SMAD4-202ENST00000398417 CD36P16671 472 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 AMD1P17707 334 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 RPS3P23396 243 aaKnown RBP eCLIP4.78□□□□□ -1.651e-8■■■■□ 23.6
SMAD4-202ENST00000398417 CCR7P32248 378 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 HMGCLP35914 325 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 TGFBR1P36897 503 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 BCAP31P51572 246 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 CAP1Q01518 475 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 SRSF11Q05519 484 aaKnown RBP4.78□□□□□ -1.65
SMAD4-202ENST00000398417 CYP2A13Q16696 494 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 ZNF829Q3KNS6 432 aaPredicted RBP4.78□□□□□ -1.65
SMAD4-202ENST00000398417 TPGS2Q68CL5 300 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 NUP54Q7Z3B4 507 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 OR8H2Q8N162 312 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 TCAIMQ8N3R3 496 aa4.78□□□□□ -1.65
SMAD4-202ENST00000398417 KREMEN2Q8NCW0 462 aa4.78□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms