RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZNF682O95780 498 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 KLK1P06870 262 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 PROS1P07225 676 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 LINC00271P0C7V0 271 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 ZNF10P21506 573 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 IGFALSP35858 605 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 LEPRP48357 1165 aaKnown RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 NUP107P57740 925 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 MCCD1P59942 119 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 DMWDQ09019 674 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 LCP2Q13094 533 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 OR4D1Q15615 310 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 PIP5KL1Q5T9C9 394 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 ANKRD26P1Q6NSI1 321 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 C10orf53Q8N6V4 93 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 TTC29Q8NA56 475 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 OTUB1Q96FW1 271 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 FCRL4Q96PJ5 515 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CPNE7Q9UBL6 633 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 LCTP09848 1927 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 HTRA2O43464 458 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CD160O95971 181 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CR2P20023 1033 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 GABRB3P28472 473 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CRATP43155 626 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 ZXDAP98168 799 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 NFKB2Q00653 900 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 VAC14Q08AM6 782 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 C16orf72Q14CZ0 275 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CATSPEREQ5SY80 951 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 TMIGD1Q6UXZ0 262 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 OR4N5Q8IXE1 308 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CAMKK1Q8N5S9 505 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 PCYOX1LQ8NBM8 494 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 OR4F6Q8NGB9 312 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 GAB3Q8WWW8 586 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 UBE2E3Q969T4 207 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CCDC138Q96M89 665 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 CD320Q9NPF0 282 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 TBC1D23Q9NUY8 699 aa9.96□□□□□ -0.82
COL6A3-205ENST00000392004 SPTBN4Q9H254 2564 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SLC9B1P1A6NJY1 282 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 CD9P21926 228 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ADRA1AP35348 466 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 DRD3P35462 400 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 KIR2DL1P43626 348 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 MANFP55145 182 aaKnown RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 OC90Q02509 493 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 NNATQ16517 81 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ARHGAP40Q5TG30 622 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PHTF2Q8N3S3 785 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 BHLHE22Q8NFJ8 381 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 METTL21AQ8WXB1 218 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SLC9A6Q92581 669 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 DLG3Q92796 817 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PHF12Q96QT6 1004 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 GFM1Q96RP9 751 aaKnown RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 INSM2Q96T92 566 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 NDC1Q9BTX1 674 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ADAP2Q9NPF8 381 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PNO1Q9NRX1 252 aaKnown RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 UBAP1Q9NZ09 502 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 TBC1D29Q9UFV1 150 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SLC23A2Q9UGH3 650 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 BLOC1S6Q9UL45 172 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 A0A0G2JMZ2 1700 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 URADA6NGE7 173 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 C4orf47A7E2U8 309 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SGTAO43765 313 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 AVPR2P30518 371 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 KRT20P35900 424 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 CCR8P51685 355 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 CYP2R1Q6VVX0 501 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ERI1Q8IV48 349 aaKnown RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SFTPA2Q8IWL1 248 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 TMCO5AQ8N6Q1 288 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ZBTB8BQ8NAP8 495 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 HSPBAP1Q96EW2 488 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 RBM18Q96H35 190 aaKnown RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 LRTM1Q9HBL6 345 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ITM2CQ9NQX7 267 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 WSB2Q9NYS7 404 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 NUDT4Q9NZJ9 180 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 SNX11Q9Y5W9 270 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 HEBP2Q9Y5Z4 205 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PI4KAP42356 2102 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 FGF3P11487 239 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ME2P23368 584 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 RNF144AP50876 292 aaPredicted RBP9.95□□□□□ -0.82
COL6A3-205ENST00000392004 OCA2Q04671 838 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 HKDC1Q2TB90 917 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 CES4AQ5XG92 561 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 KCTD11Q693B1 232 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 ALDH16A1Q8IZ83 802 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 METTL25Q8N6Q8 603 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PPM1MQ96MI6 270 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 NRTNQ99748 197 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 EDEM2Q9BV94 578 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 EBF1Q9UH73 591 aa9.95□□□□□ -0.82
COL6A3-205ENST00000392004 PDE10AQ9Y233 779 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms