RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 LRRC15Q8TF66 581 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SHISA4Q96DD7 197 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SLC45A3Q96JT2 553 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 RDH12Q96NR8 316 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 VRTNQ9H8Y1 702 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 RC3H2Q9HBD1 1191 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MRM3Q9HC36 420 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CHD4Q14839 1912 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 RBMXL2O75526 392 aaKnown RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 KLK1P06870 262 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ATP1B2P14415 290 aaPredicted RBP11.12□□□□□ -0.63
PTPRF-203ENST00000372407 NDUFS1P28331 727 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 SEMA3AQ14563 771 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF404Q494X3 552 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CLEC12AQ5QGZ9 265 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF678Q5SXM1 525 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF613Q6PF04 617 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 AGTRAPQ6RW13 159 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MARCH9Q86YJ5 346 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 OR5AK3PQ8NH89 298 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 CST11Q9H112 138 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 XYLT2Q9H1B5 865 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 EHD1Q9H4M9 534 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MARK1Q9P0L2 795 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 NUP188Q5SRE5 1749 aa11.12□□□□□ -0.63
PTPRF-203ENST00000372407 MYH10P35580 1976 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CLPXO76031 633 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 HLA-DPB1P04440 258 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ACP5P13686 325 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CD72P21854 359 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 AHCYP23526 432 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 GPR17Q13304 367 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 WSCD2Q2TBF2 565 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ARSIQ5FYB1 569 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 EMC10Q5UCC4 262 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TXNDC8Q6A555 127 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 LINGO2Q7L985 606 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 NUP54Q7Z3B4 507 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 NUS1Q96E22 293 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ZBED3Q96IU2 234 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ERMAPQ96PL5 475 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 UCK2Q9BZX2 261 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TNFRSF10DQ9UBN6 386 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 MKLN1Q9UL63 735 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 Q9Y3F1 56 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 A0A075B6Q4 140 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ERI3O43414 337 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 HCRTO43612 131 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 POP7O75817 140 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF30P17039 623 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 GSCP56915 257 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CSTF1Q05048 431 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 MS4A13Q5J8X5 152 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 C6orf136Q5SQH8 315 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 FBXO46Q6PJ61 603 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 RPS27LQ71UM5 84 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF676Q8N7Q3 588 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ZFAND2BQ8WV99 257 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM203Q969S6 136 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 IL12RB2Q99665 862 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CCM2Q9BSQ5 444 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 WDR26Q9H7D7 661 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 POPDC3Q9HBV1 291 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 PRAMEF11O60813 436 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 DIRAS1O95057 198 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ALDOAP04075 364 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 DIO3P55073 304 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TMIGD1Q6UXZ0 262 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CEACAM20Q6UY09 585 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 CYS1Q717R9 158 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 THOC6Q86W42 341 aaKnown RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 NPAS3Q8IXF0 933 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF420Q8TAQ5 688 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TBX5Q99593 518 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 YIPF4Q9BSR8 244 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 TOR3AQ9H497 397 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 NEUROD4Q9HD90 331 aa11.11□□□□□ -0.63
PTPRF-203ENST00000372407 SDHDO14521 159 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ARL6IP5O75915 188 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF432O94892 652 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 RCBTB2O95199 551 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 RB1P06400 928 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TACSTD2P09758 323 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 MEP1AQ16819 746 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 PRPF38BQ5VTL8 546 aaKnown RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 KIAA1614Q5VZ46 1190 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GALNTL5Q7Z4T8 443 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 DCAF4L2Q8NA75 395 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 NPLOC4Q8TAT6 608 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TFGQ92734 400 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 KCNA7Q96RP8 456 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 SLC38A3Q99624 504 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 KXD1Q9BQD3 176 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TRMT61BQ9BVS5 477 aaKnown RBP11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TM9SF3Q9HD45 589 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 C14orf105Q9NVL8 296 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM248Q9NWD8 314 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 COPS7AQ9UBW8 275 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 GIMAP2Q9UG22 337 aa11.1□□□□□ -0.63
PTPRF-203ENST00000372407 FKBP7Q9Y680 259 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms