RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 FBXO10Q9UK96 956 aa13.83□□□□□ -0.2
CD48-201ENST00000368045 hCG_2039718K7EN88 272 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 M0R3G1 203 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 LEFTY2O00292 366 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 PSIP1O75475 530 aaKnown RBP13.82□□□□□ -0.2
CD48-201ENST00000368045 PORP16435 677 aaPredicted RBP13.82□□□□□ -0.2
CD48-201ENST00000368045 EFNA1P20827 205 aaPredicted RBP13.82□□□□□ -0.2
CD48-201ENST00000368045 HOXA9P31269 272 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 FMO3P31513 532 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 VIPR1P32241 457 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 HPCAL1P37235 193 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 CCL23P55773 120 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 SEMG2Q02383 582 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 FADDQ13158 208 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 ITGADQ13349 1161 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 XKR6Q5GH73 641 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 LDLRAP1Q5SW96 308 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 GDPD4Q6W3E5 623 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 TMC8Q8IU68 726 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 ATG16L2Q8NAA4 619 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 OR10Q1Q8NGQ4 319 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 FCGR1BQ92637 280 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 CXorf40BQ96DE9 158 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 DUSP26Q9BV47 211 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 GABARAPL3Q9BY60 117 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 ABCG8Q9H221 673 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 CHST8Q9H2A9 424 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 FAM83DQ9H4H8 585 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 TPT1P8Q9HAU6 139 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 FBXO8Q9NRD0 319 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 ADPRHL2Q9NX46 363 aa13.82□□□□□ -0.2
CD48-201ENST00000368045 PQBP1O60828 265 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 FAM20BO75063 409 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CPSF4O95639 269 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 FUCA1P04066 466 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CD22P20273 847 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PTX3P26022 381 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 CD6P30203 668 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 HLA-FP30511 346 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PCGF2P35227 344 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 RELAQ04206 551 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 DOC2AQ14183 400 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ELOAQ14241 798 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 DMC1Q14565 340 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CLCA4Q14CN2 919 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 TEAD4Q15561 434 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SPIN4Q56A73 249 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CPTPQ5TA50 214 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CNKSR3Q6P9H4 555 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SERPINA13PQ6UXR4 307 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 DEFB128Q7Z7B8 93 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 VTCN1Q7Z7D3 282 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SLCO6A1Q86UG4 719 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CMTM8Q8IZV2 173 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ZNF540Q8NDQ6 660 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PHF10Q8WUB8 498 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 GLMNQ92990 594 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 C7orf34Q96L11 122 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ZNF300Q96RE9 604 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 ATG10Q9H0Y0 220 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 THUMPD1Q9NXG2 353 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 MBD1Q9UIS9 605 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 PADI2Q9Y2J8 665 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PCDHGB3Q9Y5G1 929 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 DGKBQ9Y6T7 804 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 TET1Q8NFU7 2136 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 TEX28O15482 410 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SGTAO43765 313 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 BNIP3LO60238 219 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 MT-ND2P03891 347 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CATP04040 527 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 LAMP1P11279 417 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 CYP4B1P13584 511 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 IDUAP35475 653 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PXNP49023 591 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 IL1RL1Q01638 556 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SFSWAPQ12872 951 aaKnown RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 NPRL3Q12980 569 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ATP1A4Q13733 1029 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 IQCCQ4KMZ1 466 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 C10orf62Q5T681 223 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 SLC22A15Q8IZD6 547 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 TRAM1L1Q8N609 369 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ZNF689Q96CS4 500 aaPredicted RBP13.81□□□□□ -0.2
CD48-201ENST00000368045 COQ8BQ96D53 544 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ITPKCQ96DU7 683 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 SIGLEC11Q96RL6 698 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ZSCAN5AQ9BUG6 496 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 MROQ9BYG7 248 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 ACOT13Q9NPJ3 140 aa13.81□□□□□ -0.2
CD48-201ENST00000368045 PLXNB3Q9ULL4 1909 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 C1orf226A1L170 272 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 CLDN24A6NM45 220 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 ARHGEF33A8MVX0 844 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 ZSCAN9O15535 394 aaPredicted RBP13.8□□□□□ -0.2
CD48-201ENST00000368045 SUV39H1O43463 412 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 SRPRAP08240 638 aaKnown RBP13.8□□□□□ -0.2
CD48-201ENST00000368045 PSMB9P28065 219 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 MAP2K4P45985 399 aa13.8□□□□□ -0.2
CD48-201ENST00000368045 MASP1P48740 699 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms