RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 VSX2P58304 361 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 RAB15P59190 212 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 RELAQ04206 551 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 CHIT1Q13231 466 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 DOC2AQ14183 400 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 PWWP2BQ6NUJ5 590 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 PPP1R3BQ86XI6 285 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 ZNF483Q8TF39 744 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 L3HYPDHQ96EM0 354 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 ATP6V1G3Q96LB4 118 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 SELENOSQ9BQE4 189 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 NOL11Q9H8H0 719 aaKnown RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 FANCEQ9HB96 536 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 SEMA4BQ9NPR2 832 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 STARD5Q9NSY2 213 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 GEMIN8Q9NWZ8 242 aaKnown RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 H0YGG7 62 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 OR7A17O14581 309 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 SUPT7LO94864 414 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 STATHP02808 62 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 ALDH3A1P30838 453 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 ARF3P61204 181 aaPredicted RBP21.2■□□□□ 0.98
SHMT1-203ENST00000354098 IRF8Q02556 426 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 CEACAM20Q6UY09 585 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 OR52B6Q8NGF0 335 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 NXPE2Q96DL1 559 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 CCDC126Q96EE4 140 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 DDA1Q9BW61 102 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 SERTAD3Q9UJW9 196 aa21.2■□□□□ 0.98
SHMT1-203ENST00000354098 A0A1B0GTL3 188 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 CDRT15L2A8MXV6 281 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 OR1F1O43749 312 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 OR2B3O76000 313 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 WFS1O76024 890 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 SLC5A2P31639 672 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 GRK3P35626 688 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 ITGA1P56199 1179 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 REEP5Q00765 189 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 SLBPQ14493 270 aaKnown RBP eCLIP21.19■□□□□ 0.98
SHMT1-203ENST00000354098 IGF2-ASQ6U949 168 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 CCNYL1Q8N7R7 359 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 WDR34Q96EX3 536 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 CDK15Q96Q40 435 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 AIF1LQ9BQI0 150 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 ASPSCR1Q9BZE9 553 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 EHD1Q9H4M9 534 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 MID2Q9UJV3 735 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 PCDHGA3Q9Y5H0 932 aa21.19■□□□□ 0.98
SHMT1-203ENST00000354098 TRBC2A0A5B9 178 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 TMEM120BA0PK00 339 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 KATNA1O75449 491 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 DXOO77932 396 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 EIF2S1P05198 315 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF28P17035 718 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PIK3CGP48736 1102 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 NAGLUP54802 743 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 RPS15AP62244 130 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PCDH1Q08174 1060 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 WASHC2DQ5SRD0 308 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 TMEM164Q5U3C3 297 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 VN1R4Q7Z5H5 301 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 BPHLQ86WA6 291 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 LSMEM2Q8N112 164 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 GOLGA6L1Q8N7Z2 621 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 OR8K5Q8NH50 307 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 TRPC4APQ8TEL6 797 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PPP4R1Q8TF05 950 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PTCD3Q96EY7 689 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF285Q96NJ3 590 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 MACROD1Q9BQ69 325 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 SARGQ9BW04 601 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 MLXIPLQ9NP71 852 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 IRAK4Q9NWZ3 460 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PCDHGA4Q9Y5G9 962 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 CEP295Q9C0D2 2601 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 KCNE1BA0A087WTH5 132 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 TM9SF1O15321 606 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 NVLO15381 856 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 SRPX2O60687 465 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 H2AFYO75367 372 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 CASP2P42575 452 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 DNAJB13P59910 316 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 CLCQ05315 142 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 E2F2Q14209 437 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 RBBP5Q15291 538 aaKnown RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 TBCCQ15814 346 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 LARP7Q4G0J3 582 aaKnown RBP eCLIP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 LIPMQ5VYY2 423 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 CYB5D1Q6P9G0 228 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ANKRD42Q8N9B4 389 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ANKRD53Q8N9V6 530 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 MDM1Q8TC05 714 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 GATA6Q92908 595 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ATP6V1E2Q96A05 226 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 PKNOX2Q96KN3 472 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 GSTO2Q9H4Y5 243 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ACTR8Q9H981 624 aa21.18■□□□□ 0.98
SHMT1-203ENST00000354098 ZNF490Q9ULM2 529 aaPredicted RBP21.18■□□□□ 0.98
SHMT1-203ENST00000354098 P2RX6O15547 441 aa21.17■□□□□ 0.98
SHMT1-203ENST00000354098 SCRG1O75711 98 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms