RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 MKS1Q9NXB0 559 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 POLR3HQ9Y535 204 aaPredicted RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 PCDHB11Q9Y5F2 797 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 DNAJC15Q9Y5T4 150 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 ZZEF1O43149 2961 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 A0A1W2PPV9 198 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 DCDC2BA2VCK2 349 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 ANKDD1BA6NHY2 528 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 OR5K4A6NMS3 321 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 BIRC5O15392 142 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 AKAP10O43572 662 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 CDC123O75794 336 aaPredicted RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 CHEK2O96017 543 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 RPS17P08708 135 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 ENO2P09104 434 aaPredicted RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 SLC2A4P14672 509 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 NDUFS1P28331 727 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 CSF2RBP32927 897 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 GRK3P35626 688 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 SOX11P35716 441 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 RPS13P62277 151 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 RPL38P63173 70 aaKnown RBP8.85□□□□□ -0.99
USP4-202ENST00000351842 IFT88Q13099 833 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 TRAF3Q13114 568 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 CYP2A13Q16696 494 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 STPG1Q5TH74 334 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 NEK10Q6ZWH5 1172 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 TRIM42Q8IWZ5 723 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 KCT2Q8NC54 265 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 SEC16BQ96JE7 1060 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 F2RL3Q96RI0 385 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 TMEM120AQ9BXJ8 343 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 SYNPO2LQ9H987 977 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 SLC6A20Q9NP91 592 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 ACACBO00763 2458 aa8.85□□□□□ -0.99
USP4-202ENST00000351842 OR2W5A6NFC9 320 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 C2orf74A8MZ97 194 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 DUX1O43812 170 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GFRA3O60609 400 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 EDF1O60869 148 aaKnown RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 CTSVO60911 334 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SEC22BO75396 215 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 DNAJC8O75937 253 aaPredicted RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 PDYNP01213 254 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 ZNF806P0C7X5 589 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GLB1P16278 677 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 IL1RNP18510 177 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 XRCC1P18887 633 aaPredicted RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 CMPK1P30085 196 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OCRLQ01968 901 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SPIDRQ14159 915 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GPR19Q15760 415 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 HKDC1Q2TB90 917 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 AP5B1Q2VPB7 878 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 C1orf189Q5VU69 101 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 FRMPD2BQ6IN97 320 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 TMIGD1Q6UXZ0 262 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 HUS1BQ8NHY5 278 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 AGAP11Q8TF27 550 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 C17orf62Q9BQA9 187 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 NLGN3Q9NZ94 848 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 MAU2Q9Y6X3 613 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 IGHV1OR21-1A0A087WYE8 117 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 IGKV1-8A0A0C4DH67 115 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 LOC100653049A0A140TA62 436 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 A0A1W2PQM1 296 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OR5K3A6NET4 321 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GLOD5A6NK44 160 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 TOR1BO14657 336 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 HYAL3O43820 417 aaPredicted RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 KRT34O76011 436 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 KIAA0754O94854 1291 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 ARFIP2P53365 341 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 NHLH1Q02575 133 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 PRDX1Q06830 199 aaKnown RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 RPS6KA2Q15349 733 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 ZIC1Q15915 447 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 FIGLAQ6QHK4 219 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 NAXDQ8IW45 347 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 FNDC5Q8NAU1 212 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OR2A14Q96R47 310 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 DUSP23Q9BVJ7 150 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SEMA6CQ9H3T2 930 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 OR6C2Q9NZP2 312 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 RAP2CQ9Y3L5 183 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 USH1CQ9Y6N9 552 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 GNG14A0A1W2PPG7 69 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 PMS2P1A4D2B8 440 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 STX16-NPEPL1H3BU86 382 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 STX16O14662 325 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SLC16A5O15375 505 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 KDM1AO60341 852 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 ESRRBO95718 433 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 MLYCDO95822 493 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 ITIH1P19827 911 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SERPINB5P36952 375 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 MLLT3P42568 568 aaPredicted RBP8.84□□□□□ -0.99
USP4-202ENST00000351842 CPA2P48052 419 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 SLC6A12P48065 614 aa8.84□□□□□ -0.99
USP4-202ENST00000351842 RXRGP48443 463 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms