RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 BCL7CQ8WUZ0 217 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-202ENST00000341753 YME1L1Q96TA2 773 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 NTMT1Q9BV86 223 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ELOVL6Q9H5J4 265 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 RLIMQ9NVW2 624 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 PDZK1P1A8MUH7 402 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 H3BNC9 293 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 KRT6AP02538 564 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 KRT6BP04259 564 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ADORA3P0DMS8 318 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ZNF7P17097 686 aaPredicted RBP21.66■■□□□ 1.06
TRIM28-202ENST00000341753 KRT6CP48668 564 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 AGAP6Q5VW22 663 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ADGRG2Q8IZP9 1017 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 CYP4Z2PQ8N1L4 340 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 DNAJC22Q8N4W6 341 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 TBC1D20Q96BZ9 403 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 HRASLS5Q96KN8 279 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 AGAP4Q96P64 663 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 CEP44Q9C0F1 390 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ASIC5Q9NY37 505 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 ZNF221Q9UK13 617 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 RPS6KA6Q9UK32 745 aa21.66■■□□□ 1.06
TRIM28-202ENST00000341753 GFRA2O00451 464 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 WDR47O94967 919 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 GJB5O95377 273 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 C9P02748 559 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 PRKCDQ05655 676 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 TBCEQ15813 527 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-202ENST00000341753 BCL7AQ4VC05 210 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 RNF219Q5W0B1 726 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-202ENST00000341753 PAF1Q8N7H5 531 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 NEDD4LQ96PU5 975 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 FEVQ99581 238 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 OLA1Q9NTK5 396 aaKnown RBP21.65■■□□□ 1.06
TRIM28-202ENST00000341753 PCDH10Q9P2E7 1040 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 PCDHB1Q9Y5F3 818 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 FRMPD3Q5JV73 1810 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 A0A1W2PQ67 120 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 TMEM189-UBE2V1I3L0A0 370 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 ZW10O43264 779 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 ACSL4O60488 711 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 CDK1P06493 297 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 ATF6P18850 670 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 DGKAP23743 735 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 KIR3DL1P43629 444 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 ITGA1P56199 1179 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 SERPINA11Q86U17 422 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 OR8H2Q8N162 312 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 ZBTB2Q8N680 514 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 UTP15Q8TED0 518 aaKnown RBP21.65■■□□□ 1.06
TRIM28-202ENST00000341753 FCGR1BQ92637 280 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 NELL1Q92832 810 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 SDHCQ99643 169 aaPredicted RBP21.65■■□□□ 1.06
TRIM28-202ENST00000341753 PLXNA4Q9HCM2 1894 aa21.65■■□□□ 1.06
TRIM28-202ENST00000341753 A0A1W2PQ45 241 aaPredicted RBP21.64■■□□□ 1.06
TRIM28-202ENST00000341753 A0A1W2PQY0 241 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 SH3BGRLO75368 114 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 GPNMBQ14956 572 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 SMU1Q2TAY7 513 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 SPANXN2Q5MJ10 180 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 STX19Q8N4C7 294 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 KBTBD8Q8NFY9 601 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 STARD7Q9NQZ5 370 aa21.64■■□□□ 1.06
TRIM28-202ENST00000341753 H7C0S8 307 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 HOXC11O43248 304 aaPredicted RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 APOA1P02647 267 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 OPN1SWP03999 348 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 TTLL9Q3SXZ7 439 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 INO80DQ53TQ3 878 aaPredicted RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 EIF3MQ7L2H7 374 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CD99L2Q8TCZ2 262 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 MYDGFQ969H8 173 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CDK5RAP1Q96SZ6 601 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 NXF2Q9GZY0 626 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 SPASTQ9UBP0 616 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 TMA7Q9Y2S6 64 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 FCF1Q9Y324 198 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 THSD7BQ9C0I4 1608 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CLCA1A8K7I4 914 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 RGS13O14921 159 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 MRPS14O60783 128 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 EPN2O95208 641 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 RGS6P49758 472 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CRYBA2P53672 197 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 UGT2B15P54855 530 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 ARF5P84085 180 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 MRPL58Q14197 206 aaKnown RBP21.64■■□□□ 1.05
TRIM28-202ENST00000341753 FUT10Q6P4F1 479 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CBLL1Q75N03 491 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 FAM124AQ86V42 546 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 OR6F1Q8NGZ6 308 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 CEP295NLQ96MC4 621 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 RNF38Q9H0F5 515 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 GKN1Q9NS71 199 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 ARL15Q9NXU5 204 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 TBC1D14Q9P2M4 693 aa21.64■■□□□ 1.05
TRIM28-202ENST00000341753 GAPDHSO14556 408 aaPredicted RBP21.63■■□□□ 1.05
TRIM28-202ENST00000341753 SYN3O14994 580 aa21.63■■□□□ 1.05
TRIM28-202ENST00000341753 YY2O15391 372 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms