RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NEUROD4Q9HD90 331 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 MTMR10Q9NXD2 777 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 SRPK3Q9UPE1 567 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 BHMG1C9JSJ3 638 aaPredicted RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 MTHFD1P11586 935 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 GSTM5P46439 218 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ZNF140P52738 457 aaPredicted RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 KIAA1024LP59773 190 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 EPS8Q12929 822 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 CYS1Q717R9 158 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 PLD3Q8IV08 490 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ARFGAP1Q8N6T3 406 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 CNTD1Q8N815 330 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ATP6V1C2Q8NEY4 427 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 DAZLQ92904 295 aaKnown RBP9.83□□□□□ -0.84
USP54-201ENST00000339859 CDC6Q99741 560 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 FOXQ1Q9C009 403 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 IL37Q9NZH6 218 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 OR10H3O60404 316 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 FAM20BO75063 409 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 OR4K14Q8NGD5 310 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 ROPN1LQ96C74 230 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 PKP4Q99569 1192 aa9.83□□□□□ -0.84
USP54-201ENST00000339859 PDE5AO76074 875 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 SIX3O95343 332 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 MAOBP27338 520 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 IL5RAQ01344 420 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 ZNF678Q5SXM1 525 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 VN1R5Q7Z5H4 357 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 SLC6A18Q96N87 628 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 SLC39A1Q9NY26 324 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CPNE7Q9UBL6 633 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 POLR1CO15160 346 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 F7P08709 466 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 DLG1Q12959 904 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 SGCBQ16585 318 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CDKN3Q16667 212 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 Q6ZNB5 142 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 NET1Q7Z628 596 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 ZNF605Q86T29 641 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CHCHD4Q8N4Q1 142 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 VANGL1Q8TAA9 524 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 CNBD2Q96M20 576 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 ZFYVE21Q9BQ24 234 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 P2RX2Q9UBL9 471 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 MYH10P35580 1976 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CBX6O95503 412 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 TOP3BO95985 862 aaKnown RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 PLGP00747 810 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 FHP07954 510 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 ITGA3P26006 1051 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 GDF5P43026 501 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 IDH3AP50213 366 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 DMWDQ09019 674 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 FCHO2Q0JRZ9 810 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 ZNF730Q6ZMV8 503 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 TEX26Q8N6G2 289 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 RNF148Q8N7C7 305 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 B4GALT7Q9UBV7 327 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 EVPLQ92817 2033 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 XKRYO14609 159 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 TLX3O43711 291 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 MYL12AP19105 171 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 PRLHRP49683 370 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 DCDC1P59894 354 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 KLF10Q13118 480 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CXorf57Q6NSI4 855 aaKnown RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 LILRA6Q6PI73 481 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 STK32CQ86UX6 486 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 OR5L2Q8NGL0 311 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 CNDP2Q96KP4 475 aaKnown RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 Q96MT0 163 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 PTCHD1Q96NR3 888 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 NPAS2Q99743 824 aa9.82□□□□□ -0.84
USP54-201ENST00000339859 MARCH4Q9P2E8 410 aaPredicted RBP9.82□□□□□ -0.84
USP54-201ENST00000339859 E7ESA3 106 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 LATO43561 262 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 BRINP1O60477 761 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZMPSTE24O75844 475 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 IGLV3-27P01718 113 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 GRIA3P42263 894 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ITGA1P56199 1179 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 CTBSQ01459 385 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 HTR4Q13639 388 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 SYT13Q7L8C5 426 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ULK2Q8IYT8 1036 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 OFCC1Q8IZS5 231 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 FAM13CQ8NE31 585 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 FBXL8Q96CD0 374 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ZNF382Q96SR6 550 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 PITHD1Q9GZP4 211 aaPredicted RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 KLHL42Q9P2K6 505 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 ELOVL7A1L3X0 281 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 DLX3O60479 287 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 BCAS2O75934 225 aaPredicted RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 F3P13726 295 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 CCR2P41597 374 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 TMED10P49755 219 aaKnown RBP9.81□□□□□ -0.84
USP54-201ENST00000339859 RUNX1T1Q06455 604 aa9.81□□□□□ -0.84
USP54-201ENST00000339859 FAM109BQ6ICB4 259 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms