RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MAT1AQ00266 395 aaKnown RBP18.55■□□□□ 0.56
LIME1-201ENST00000309546 SP140Q13342 867 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 NDUFA9Q16795 377 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 SYT16Q17RD7 645 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 CNTN4Q8IWV2 1026 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 AMER3Q8N944 861 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 GPATCH11Q8N954 259 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 PRR7Q8TB68 274 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 PPP4R1Q8TF05 950 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 CCDC138Q96M89 665 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 PWWP2AQ96N64 755 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 MRPS2Q9Y399 296 aaKnown RBP18.55■□□□□ 0.56
LIME1-201ENST00000309546 PCDHGA10Q9Y5H3 936 aa18.55■□□□□ 0.56
LIME1-201ENST00000309546 NSG1A0A0A6YYJ2 146 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 PABPN1LA6NDY0 278 aaKnown RBP18.54■□□□□ 0.56
LIME1-201ENST00000309546 FOXS1O43638 330 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 SEMA7AO75326 666 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 AHSGP02765 367 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 HEXBP07686 556 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 GP1BBP13224 206 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 CXCR2P25025 360 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 SLC26A3P40879 764 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 ELK3P41970 407 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 DR1Q01658 176 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 RELAQ04206 551 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 PDAP1Q13442 181 aaKnown RBP18.54■□□□□ 0.56
LIME1-201ENST00000309546 MORF4L2Q15014 288 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 AGTRAPQ6RW13 159 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 LINC00696Q6ZRV3 163 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 KIAA0408Q6ZU52 694 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 PDIK1LQ8N165 341 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 DNAJB14Q8TBM8 379 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 TRIM51Q9BSJ1 452 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 PARVBQ9HBI1 364 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 MKKSQ9NPJ1 570 aaPredicted RBP18.54■□□□□ 0.56
LIME1-201ENST00000309546 TMEM184CQ9NVA4 438 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 NOVA2Q9UNW9 492 aaKnown RBP18.54■□□□□ 0.56
LIME1-201ENST00000309546 SH2B3Q9UQQ2 575 aa18.54■□□□□ 0.56
LIME1-201ENST00000309546 COPG1Q9Y678 874 aaKnown RBP18.54■□□□□ 0.56
LIME1-201ENST00000309546 UQCRHP07919 91 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 HIST1H2AGP0C0S8 130 aaPredicted RBP18.53■□□□□ 0.56
LIME1-201ENST00000309546 COX6A1P12074 109 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 HIST1H2ADP20671 130 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 HRH2P25021 359 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 IVDP26440 423 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 AVPR1BP47901 424 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 PGGT1BP53609 377 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 RPS15AP62244 130 aaKnown RBP18.53■□□□□ 0.56
LIME1-201ENST00000309546 NAE1Q13564 534 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 PHKG1Q16816 387 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 ATG9BQ674R7 924 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 C17orf64Q86WR6 236 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 ZC3H7AQ8IWR0 971 aaKnown RBP18.53■□□□□ 0.56
LIME1-201ENST00000309546 ARHGEF39Q8N4T4 335 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 HIST1H2AHQ96KK5 128 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 PSMG3-AS1Q96PY0 264 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 HIST1H2AJQ99878 128 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 MACROD1Q9BQ69 325 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 H2AFJQ9BTM1 129 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 TRIM31Q9BZY9 425 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 PCBD2Q9H0N5 130 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 SCN3AQ9NY46 2000 aa18.53■□□□□ 0.56
LIME1-201ENST00000309546 FEZF1A0PJY2 475 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 SLC16A5O15375 505 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 ITGA8P53708 1063 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 IL2P60568 153 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 SNRPNP63162 240 aaKnown RBP18.52■□□□□ 0.56
LIME1-201ENST00000309546 CSNK1G2P78368 415 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 FAM53BQ14153 422 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 TEDDM1Q5T9Z0 273 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 MFSD4BQ5TF39 518 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 HECTD2Q5U5R9 776 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 TRMT10BQ6PF06 316 aaKnown RBP18.52■□□□□ 0.56
LIME1-201ENST00000309546 IGFL2Q6UWQ7 119 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 ISLR2Q6UXK2 745 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 SYDE1Q6ZW31 735 aaPredicted RBP18.52■□□□□ 0.56
LIME1-201ENST00000309546 NDUFAF7Q7L592 441 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 VN1R4Q7Z5H5 301 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 KBTBD2Q8IY47 623 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 OR9A4Q8NGU2 314 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 ZCCHC10Q8TBK6 192 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 SSC4DQ8WTU2 575 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 RUNDC3BQ96NL0 473 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 WDR83Q9BRX9 315 aaKnown RBP18.52■□□□□ 0.56
LIME1-201ENST00000309546 PLAC1Q9HBJ0 212 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 MKL2Q9ULH7 1088 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 NTNG1Q9Y2I2 539 aa18.52■□□□□ 0.56
LIME1-201ENST00000309546 USP9XQ93008 2570 aaPredicted RBP18.51■□□□□ 0.55
LIME1-201ENST00000309546 TTI1O43156 1089 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 KLHL18O94889 574 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 CDH1P12830 882 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 IL1RNP18510 177 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 CCND1P24385 295 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 ARL4CP56559 192 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 CDC16Q13042 620 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 MFAP5Q13361 173 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 ELOAQ14241 798 aaKnown RBP18.51■□□□□ 0.55
LIME1-201ENST00000309546 ZNF169Q14929 603 aaPredicted RBP18.51■□□□□ 0.55
LIME1-201ENST00000309546 FAM45BPQ6NSW5 357 aa18.51■□□□□ 0.55
LIME1-201ENST00000309546 HIBCHQ6NVY1 386 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms