RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 GSTM3P21266 225 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 NHSL2Q5HYW2 709 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 CLDN19Q8N6F1 224 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 UPF1Q92900 1129 aaKnown RBP eCLIP18.76■□□□□ 0.59
USP48-201ENST00000308271 SUSD3Q96L08 255 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 BARD1Q99728 777 aaKnown RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 NCKAP1Q9Y2A7 1128 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 HSPB3Q12988 150 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 FRS2Q8WU20 508 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 ZFP3Q96NJ6 502 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 NAA50Q9GZZ1 169 aaKnown RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 TNKS2Q9H2K2 1166 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.76■□□□□ 0.59
USP48-201ENST00000308271 CAMK1GQ96NX5 476 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 CALML5Q9NZT1 146 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 PCTPQ9UKL6 214 aa18.76■□□□□ 0.59
USP48-201ENST00000308271 PTCHD3Q3KNS1 767 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 CNTN4Q8IWV2 1026 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 KRTCAP2Q8N6L1 136 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PAPD5Q8NDF8 572 aaKnown RBP18.75■□□□□ 0.59
USP48-201ENST00000308271 RAD51AP1Q96B01 352 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 ZBED6CLQ96FA7 236 aaPredicted RBP18.75■□□□□ 0.59
USP48-201ENST00000308271 EFCAB11Q9BUY7 163 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 GRM6O15303 877 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 ASB18Q6ZVZ8 466 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 OR52B6Q8NGF0 335 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 NDNFQ8TB73 568 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 ZNF431Q8TF32 576 aaPredicted RBP18.75■□□□□ 0.59
USP48-201ENST00000308271 PCDHGB6Q9Y5F9 930 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PCDHGB5Q9Y5G0 923 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PCP4L1A6NKN8 68 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PROX2Q3B8N5 592 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 POM121L1PQ3SYA9 428 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PM20D1Q6GTS8 502 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 SPRED1Q7Z699 444 aa18.75■□□□□ 0.59
USP48-201ENST00000308271 PGAP3Q96FM1 320 aaPredicted RBP18.75■□□□□ 0.59
USP48-201ENST00000308271 TPST2O60704 377 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 STSP08842 583 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 SLC35G4P0C7Q5 338 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 EDNRBP24530 442 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 TUBB3Q13509 450 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ABRAXAS2Q15018 415 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 NDUFA9Q16795 377 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 BTBD16Q32M84 506 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ELMOD2Q8IZ81 293 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 NATD1Q8N6N6 113 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 DPAGT1Q9H3H5 408 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 PDPK1O15530 556 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 OR6A2O95222 327 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 POP4O95707 220 aaKnown RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 SMSP52788 366 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 LARS2Q15031 903 aaKnown RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 CHRNA6Q15825 494 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ZNF789Q5FWF6 425 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 NFKBIDQ8NI38 313 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 CXorf40AQ8TE69 158 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 NT5C1B-RDH14C9J2C7 533 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 INMT-MINDY4F8WBC2 141 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 AGXTP21549 392 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ERP29P30040 261 aaKnown RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 SGCGQ13326 291 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 TRNP1Q6NT89 227 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 OR13F1Q8NGS4 319 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 PTERQ96BW5 349 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 SLC35G5Q96KT7 338 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 TTYH2Q9BSA4 534 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 DOHHQ9BU89 302 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 RIIAD1A6NNX1 92 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 VIPP01282 170 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ALPIP09923 528 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 MATN1P21941 496 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 ZNHIT3Q15649 155 aaPredicted RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 FNDC3BQ53EP0 1204 aaKnown RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 ZNF433Q8N7K0 673 aaPredicted RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 CHDHQ8NE62 594 aaPredicted RBP18.74■□□□□ 0.59
USP48-201ENST00000308271 MOSPD2Q8NHP6 518 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 UCKL1Q9NWZ5 548 aa18.74■□□□□ 0.59
USP48-201ENST00000308271 NDUFB5O43674 189 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 MITFO75030 526 aaPredicted RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 SAGP10523 405 aaPredicted RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 STOMP27105 288 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 CRISP3P54108 245 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 HNRNPA0Q13151 305 aaKnown RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 KEAP1Q14145 624 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 DCP2Q8IU60 420 aaKnown RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 MMAAQ8IVH4 418 aaKnown RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 LSMEM2Q8N112 164 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 FAM98AQ8NCA5 519 aaKnown RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 ACVR1CQ8NER5 493 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 OR6Q1Q8NGQ2 317 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 FUBP1Q96AE4 644 aaKnown RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 OCEL1Q9H607 264 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 TLX2O43763 284 aaPredicted RBP18.73■□□□□ 0.59
USP48-201ENST00000308271 HMGN1P05114 100 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 EDN1P05305 212 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 KCNA5P22460 613 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 GADD45AP24522 165 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 CREB5Q02930 508 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 KCNC4Q03721 635 aa18.73■□□□□ 0.59
USP48-201ENST00000308271 RIPPLY1Q0D2K3 151 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms