RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 ATCAYQ86WG3 371 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 C17orf64Q86WR6 236 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 PRSS58Q8IYP2 241 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 SPATA4Q8NEY3 305 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 OR11G2Q8NGC1 345 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 THAP11Q96EK4 314 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 MMABQ96EY8 250 aaPredicted RBP15.29■□□□□ 0.04
USE1-201ENST00000263897 VPS50Q96JG6 964 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 ERP44Q9BS26 406 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 CRB3Q9BUF7 120 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 SGPP1Q9BX95 441 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 TRIM54Q9BYV2 358 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 TRPC4Q9UBN4 977 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 MAP4K5Q9Y4K4 846 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 PSAT1Q9Y617 370 aa15.29■□□□□ 0.04
USE1-201ENST00000263897 DOPEY2Q9Y3R5 2298 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 P2RX6O15547 441 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 IPO13O94829 963 aaKnown RBP15.28■□□□□ 0.04
USE1-201ENST00000263897 ITGA3P26006 1051 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 AP1S2P56377 157 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 NDUFA9Q16795 377 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 TUBB8Q3ZCM7 444 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 PLEKHN1Q494U1 663 aaPredicted RBP15.28■□□□□ 0.04
USE1-201ENST00000263897 ATG9BQ674R7 924 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 DUPD1Q68J44 220 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 SLC6A19Q695T7 634 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 CAPN13Q6MZZ7 669 aaPredicted RBP15.28■□□□□ 0.04
USE1-201ENST00000263897 LCTLQ6UWM7 567 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 TMEM207Q6UWW9 146 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 MAATS1Q7Z4T9 603 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 VN1R4Q7Z5H5 301 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 STRA8Q7Z7C7 330 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 ZC3HC1Q86WB0 502 aaKnown RBP15.28■□□□□ 0.04
USE1-201ENST00000263897 ZBED8Q8IZ13 594 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 AMER3Q8N944 861 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 Q8NA96 180 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 CPT1CQ8TCG5 803 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 PNPLA2Q96AD5 504 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 ALKBH8Q96BT7 664 aaKnown RBP15.28■□□□□ 0.04
USE1-201ENST00000263897 YIPF2Q9BWQ6 316 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 DRC3Q9H069 523 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 SLAMF7Q9NQ25 335 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 ARL15Q9NXU5 204 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 WHRNQ9P202 907 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 C3orf18Q9UK00 162 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 SH2B3Q9UQQ2 575 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.28■□□□□ 0.04
USE1-201ENST00000263897 SHANK1Q9Y566 2161 aa15.28■□□□□ 0.04
USE1-201ENST00000263897 SCN3AQ9NY46 2000 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 A0A0A6YYC8 382 aaPredicted RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 I3L1I5 382 aaPredicted RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 LCMT2O60294 686 aaKnown RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 ALOX12BO75342 701 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 ANXA5P08758 320 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 CASQ1P31415 396 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 EMP2P54851 167 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 ETF1P62495 437 aaKnown RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 CALCOCO2Q13137 446 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 ESPL1Q14674 2120 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 INPP5JQ15735 1006 aaPredicted RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 SLC26A11Q86WA9 606 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 PARP9Q8IXQ6 854 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 EFCAB3Q8N7B9 438 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 OR56A3Q8NH54 315 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 PYROXD1Q8WU10 500 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 ANKRD7Q92527 254 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 FBXL8Q96CD0 374 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 TM4SF19Q96DZ7 209 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 MESP1Q9BRJ9 268 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 HAUS8Q9BT25 410 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 TGIF2Q9GZN2 237 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 DPH5Q9H2P9 285 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 MKKSQ9NPJ1 570 aaPredicted RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 LUZP4Q9P127 313 aa15.27■□□□□ 0.04
USE1-201ENST00000263897 MRPS2Q9Y399 296 aaKnown RBP15.27■□□□□ 0.04
USE1-201ENST00000263897 FAM95CA0A1B0GW59 222 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 FEZF1A0PJY2 475 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 PABPN1LA6NDY0 278 aaKnown RBP15.26■□□□□ 0.03
USE1-201ENST00000263897 IDSB3KWA1 339 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 FFAR3O14843 346 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 GPR42O15529 346 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 RAD51CO43502 376 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 STATHP02808 62 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 ENO2P09104 434 aaPredicted RBP15.26■□□□□ 0.03
USE1-201ENST00000263897 CDH1P12830 882 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 ACPPP15309 386 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 SAT1P21673 171 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 AVPR1BP47901 424 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 SNRPNP63162 240 aaKnown RBP15.26■□□□□ 0.03
USE1-201ENST00000263897 C17orf53Q8N3J3 647 aaPredicted RBP15.26■□□□□ 0.03
USE1-201ENST00000263897 ZADH2Q8N4Q0 377 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 NKAPQ8N5F7 415 aaKnown RBP15.26■□□□□ 0.03
USE1-201ENST00000263897 GALNT11Q8NCW6 608 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 ABHD11Q8NFV4 315 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 OR4K1Q8NGD4 311 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 ATL1Q8WXF7 558 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 TM9SF4Q92544 642 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 PYCR2Q96C36 320 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 C8orf44Q96CB5 159 aa15.26■□□□□ 0.03
USE1-201ENST00000263897 FAM129AQ9BZQ8 928 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms