RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 AHSA1O95433 338 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 RFX5P48382 616 aaPredicted RBP13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 ZNF136P52737 540 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 ZBED5Q49AG3 693 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 TMPRSS7Q7RTY8 843 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 BEST3Q8N1M1 668 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 RPLP0P6Q8NHW5 317 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 ATG5Q9H1Y0 275 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 SDHAF2Q9NX18 166 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 KCNIP1Q9NZI2 227 aa13.58□□□□□ -0.23
CCDC88A-201ENST00000263630 FLRT2O43155 660 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PAK4O96013 591 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 CYP3A5P20815 502 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MALLQ13021 153 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 GSG1LQ6UXU4 331 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 DPYSL5Q9BPU6 564 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 NPHS1O60500 1241 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 GLUD1P00367 558 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SOX9P48436 509 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 RPL26P61254 145 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ST3GAL3Q11203 375 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PDZD9Q8IXQ8 264 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 CCDC71LQ8N9Z2 235 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MYRFLQ96LU7 910 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM246Q9BRR3 403 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PCDHGA6Q9Y5G7 932 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 RARRES1P49788 294 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MPP1Q00013 466 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SEMA3AQ14563 771 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ELMOD2Q8IZ81 293 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC6A7Q99884 636 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 DUSP26Q9BV47 211 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 POLMQ9NP87 494 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF701Q9NV72 531 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 TRAV6A0A075B6T7 132 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 TLL1O43897 1013 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 RBBP9O75884 186 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SLITRK5O94991 958 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PLATP00750 562 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MRPS5P82675 430 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MFSD13AQ14CX5 517 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 STON2Q8WXE9 905 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ALPK1Q96QP1 1244 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ARMC1Q9NVT9 282 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 JUNP05412 331 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF181Q2M3W8 571 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC36A4Q6YBV0 504 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 LILRB2Q8N423 598 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 NAT16Q8N8M0 369 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SHC3Q92529 594 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PORCNQ9H237 461 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PPA2Q9H2U2 334 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 RAI2Q9Y5P3 530 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 hCG_1818297A0A087WSY0 165 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 OR6C75A6NL08 312 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PAPSS1O43252 624 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PAGE1O75459 146 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 KLK3P07288 261 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 HSPA7P48741 367 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 C1orf94Q6P1W5 598 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 WDR53Q7Z5U6 358 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ALDH16A1Q8IZ83 802 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 PIAS4Q8N2W9 510 aaPredicted RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 C7orf57Q8NEG2 295 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 KCNC2Q96PR1 638 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 MTG2Q9H4K7 406 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 WDPCPO95876 746 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 ADORA2AP29274 412 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 GANABQ14697 944 aaKnown RBP13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 LRRC37A5PQ49AS3 106 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC2A7Q6PXP3 512 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC35A5Q9BS91 424 aa13.58□□□□□ -0.24
CCDC88A-201ENST00000263630 IL7P13232 177 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ASPAP45381 313 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 PPP4CP60510 307 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 EEF1A1P68104 462 aaKnown RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 EEF1A1P5Q5VTE0 462 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 RPL13AP3Q6NVV1 102 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM156Q8N614 296 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 KIAA0895Q8NCT3 520 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ENAMQ9NRM1 1142 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 RFPL1O75677 317 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 EML3Q32P44 896 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TRABD2AQ86V40 505 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC44A1Q8WWI5 657 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 DPF1Q92782 380 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ZDHHC12Q96GR4 267 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SYT3Q9BQG1 590 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM109Q9BVC6 243 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 BCAS3Q9H6U6 928 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 NMUR1Q9HB89 426 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TAS2R8Q9NYW2 309 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 TET3O43151 1660 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ARID1BQ8NFD5 2236 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ANKRD28O15084 1053 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 FFAR2O15552 330 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 IRF5Q13568 498 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF169Q14929 603 aaPredicted RBP13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 SPATS1Q496A3 300 aa13.57□□□□□ -0.24
CCDC88A-201ENST00000263630 PACRGLQ8N7B6 248 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms