RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CPNE3O75131 537 aaKnown RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 EPOP01588 193 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 GADD45AP24522 165 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 APLP1P51693 650 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ELOCQ15369 112 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 TMEM156Q8N614 296 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 PQLC3Q8N755 202 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ZNF461Q8TAF7 563 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 PEX13Q92968 403 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ZNF99A8MXY4 864 aaPredicted RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 J3KR12 359 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 PDLIM1O00151 329 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ERI3O43414 337 aaKnown RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 EBLN1P0CF75 366 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 RORCP51449 518 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 MLLT6P55198 1093 aaPredicted RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 TAS2R43P59537 309 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ST3GAL3Q11203 375 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 MADCAM1Q13477 382 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 SEMA3AQ14563 771 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 RNASE12Q5GAN4 147 aaKnown RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 RBM20Q5T481 1227 aaKnown RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 EPGNQ6UW88 154 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 OR10G2Q8NGC3 310 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 SIX4Q9UIU6 781 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 CPED1A4D0V7 1026 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 H3BUI4 141 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 MAN2B1O00754 1011 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 HCRTO43612 131 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 LATS1O95835 1130 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 LINGO3P0C6S8 592 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 XKP51811 444 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 MXD1Q05195 221 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 CBX3Q13185 183 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 NAPRTQ6XQN6 538 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 TIFABQ6ZNK6 161 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 PYCR2Q96C36 320 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 FRMD6Q96NE9 622 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 GALPQ9UBC7 116 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ITGA3P26006 1051 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 MAPK3P27361 379 aaPredicted RBP18.61■□□□□ 0.57
UPF1-201ENST00000262803 SMSP52788 366 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 AKIRIN2Q53H80 203 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 TOR1AIP1Q5JTV8 583 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 ULK3Q6PHR2 472 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 SCLYQ96I15 445 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 PRODH2Q9UF12 536 aa18.61■□□□□ 0.57
UPF1-201ENST00000262803 GP1BBP13224 206 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 INCA1Q0VD86 236 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 FAM214AQ32MH5 1076 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 LMO3Q8TAP4 145 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PIGKQ92643 395 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PEBP4Q96S96 227 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 CGREF1Q99674 301 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 RMI1Q9H9A7 625 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 SIGLEC1Q9BZZ2 1709 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 TOR1BO14657 336 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ARL6IP5O75915 188 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ZNF432O94892 652 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ACSL1P33121 698 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 SELENOVP59797 346 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ABATP80404 500 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 TXNL4AP83876 142 aaKnown RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 TCEAL1Q15170 157 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 KNDC1Q76NI1 1749 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PIM3Q86V86 326 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 THOC6Q86W42 341 aaKnown RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 MAPK15Q8TD08 544 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 BORCS6Q96GS4 357 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 KXD1Q9BQD3 176 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 GKN1Q9NS71 199 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 TVP23BQ9NYZ1 205 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PCDHGB6Q9Y5F9 930 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 HS3ST4Q9Y661 456 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 NDUFS4O43181 175 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 OR1I1O60431 355 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 H1F0P07305 194 aaKnown RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 C2orf27AQ580R0 203 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 SLC5A11Q8WWX8 675 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ELAC1Q9H777 363 aaKnown RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 STYXL1Q9Y6J8 313 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 SH3PXD2BA1X283 911 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 POP7O75817 140 aaKnown RBP18.6■□□□□ 0.57
UPF1-201ENST00000262803 PGLSO95336 258 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 CLCNKAP51800 687 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 GALNT2Q10471 571 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 CRB2Q5IJ48 1285 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PHF19Q5T6S3 580 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PGBD2Q6P3X8 592 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 RELL1Q8IUW5 271 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 NXPE1Q8N323 547 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ZNF676Q8N7Q3 588 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 FAM46DQ8NEK8 389 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 SETD6Q8TBK2 473 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 ADAMTS18Q8TE60 1221 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 CEP295NLQ96MC4 621 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 PCDHB3Q9Y5E6 796 aa18.6■□□□□ 0.57
UPF1-201ENST00000262803 GSRP00390 522 aa18.59■□□□□ 0.57
UPF1-201ENST00000262803 NANOGNBQ7Z5D8 188 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms