RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	MAD2L1	Q13257	205 aa	Predicted RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	UBAP2L	Q14157	1087 aa	Known RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	SLBP	Q14493	270 aa	Known RBP eCLIP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	SQLE	Q14534	574 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	NR6A1	Q15406	480 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	SF1	Q15637	639 aa	Known RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	GSTA3	Q16772	222 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	ZNF423	Q2M1K9	1284 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	AP5B1	Q2VPB7	878 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	TMEM198	Q66K66	360 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	TMIGD1	Q6UXZ0	262 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	ARL14	Q8N4G2	192 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	JPH3	Q8WXH2	748 aa	Predicted RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	CMTM7	Q96FZ5	175 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	PRAP1	Q96NZ9	151 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	TXLNG	Q9NUQ3	528 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	ARL8B	Q9NVJ2	186 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	UCKL1	Q9NWZ5	548 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	C1orf109	Q9NX04	203 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	SPHK1	Q9NYA1	384 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	SNX7	Q9UNH6	387 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	COPG1	Q9Y678	874 aa	Known RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	CAPN7	Q9Y6W3	813 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	TTC28	Q96AY4	2481 aa		11.33	□□□□□ -0.6
CLN6-223	ENST00000637823	YKT6	O15498	198 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	NOBOX	O60393	691 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	HNRNPCL1	O60812	293 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	SDC3	O75056	442 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	SEC22B	O75396	215 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	RSL1D1	O76021	490 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	ALDOC	P09972	364 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	T-ENOL	P0DO92	83 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	ESRRA	P11474	423 aa	Predicted RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PCNA	P12004	261 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	IDO1	P14902	403 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PRDX6	P30041	224 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PEBP1	P30086	187 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	SERPINB1	P30740	379 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PIK3CB	P42338	1070 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	MRPL19	P49406	292 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	HNRNPH2	P55795	449 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	STX1B	P61266	288 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	CSNK1G2	P78368	415 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	REEP5	Q00765	189 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	BNIP3	Q12983	259 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	GRIK2	Q13002	908 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	RPS6KA2	Q15349	733 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	DEFB133	Q30KQ1	61 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	ZFAND4	Q86XD8	727 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	TREML1	Q86YW5	311 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	SFTPA2	Q8IWL1	248 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	SLC25A45	Q8N413	288 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	TBC1D19	Q8N5T2	526 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	GPR156	Q8NFN8	814 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	OR2L3	Q8NG85	312 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	HUS1B	Q8NHY5	278 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	CMTM5	Q96DZ9	223 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	METTL2A	Q96IZ6	378 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	MARK4	Q96L34	752 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	OR2A14	Q96R47	310 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	HBEGF	Q99075	208 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	MTERF1	Q99551	399 aa	Known RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	ACPT	Q9BZG2	426 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	RHBG	Q9H310	441 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	LRTM1	Q9HBL6	345 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	CUEDC1	Q9NWM3	386 aa	Predicted RBP	11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	NMRK1	Q9NWW6	199 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	VPS29	Q9UBQ0	182 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	GIMAP2	Q9UG22	337 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	TAGLN3	Q9UI15	199 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PPT2	Q9UMR5	302 aa		11.32	□□□□□ -0.6
CLN6-223	ENST00000637823	PCDH15	Q96QU1	1955 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823		A0A1B0GTQ1	180 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	TRBC2	A0A5B9	178 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	ANKDD1B	A6NHY2	528 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	C2orf74	A8MZ97	194 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	PSMD12	O00232	456 aa	Predicted RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	PPM1D	O15297	605 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	TNFSF14	O43557	240 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	CFI	P05156	583 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	THRA	P10827	490 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	POLR2C	P19387	275 aa	Predicted RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	CALB2	P22676	271 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	PTX3	P26022	381 aa	Predicted RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	PIK3R1	P27986	724 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	GRK3	P35626	688 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	RASSF2	P50749	326 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	MNAT1	P51948	309 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	MAZ	P56270	477 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	YBX1	P67809	324 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	HMGCS1	Q01581	520 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	MEF2A	Q02078	507 aa	Predicted RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	BIRC2	Q13490	618 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	DDX39B	Q13838	428 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	NAA25	Q14CX7	972 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	HERC3	Q15034	1050 aa		11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	RBBP5	Q15291	538 aa	Known RBP	11.31	□□□□□ -0.6
CLN6-223	ENST00000637823	SHB	Q15464	509 aa		11.31	□□□□□ -0.6

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