RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 MAD2L1Q13257 205 aaPredicted RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 UBAP2LQ14157 1087 aaKnown RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 SLBPQ14493 270 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLN6-223ENST00000637823 SQLEQ14534 574 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 NR6A1Q15406 480 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 SF1Q15637 639 aaKnown RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 GSTA3Q16772 222 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 ZNF423Q2M1K9 1284 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 AP5B1Q2VPB7 878 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 TMEM198Q66K66 360 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 TMIGD1Q6UXZ0 262 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 ARL14Q8N4G2 192 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 JPH3Q8WXH2 748 aaPredicted RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 CMTM7Q96FZ5 175 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 PRAP1Q96NZ9 151 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 TXLNGQ9NUQ3 528 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 ARL8BQ9NVJ2 186 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 UCKL1Q9NWZ5 548 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 C1orf109Q9NX04 203 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 SPHK1Q9NYA1 384 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 SNX7Q9UNH6 387 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 COPG1Q9Y678 874 aaKnown RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 CAPN7Q9Y6W3 813 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 ARID1BQ8NFD5 2236 aaPredicted RBP11.33□□□□□ -0.6
CLN6-223ENST00000637823 TTC28Q96AY4 2481 aa11.33□□□□□ -0.6
CLN6-223ENST00000637823 YKT6O15498 198 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 NOBOXO60393 691 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 HNRNPCL1O60812 293 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 SDC3O75056 442 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 SEC22BO75396 215 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 RSL1D1O76021 490 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 ALDOCP09972 364 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 T-ENOLP0DO92 83 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 ESRRAP11474 423 aaPredicted RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 PCNAP12004 261 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 IDO1P14902 403 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 PRDX6P30041 224 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 PEBP1P30086 187 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 SERPINB1P30740 379 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 PIK3CBP42338 1070 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 MRPL19P49406 292 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 HNRNPH2P55795 449 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 STX1BP61266 288 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 CSNK1G2P78368 415 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 REEP5Q00765 189 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 BNIP3Q12983 259 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 GRIK2Q13002 908 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 RPS6KA2Q15349 733 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 DEFB133Q30KQ1 61 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 ZFAND4Q86XD8 727 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 TREML1Q86YW5 311 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 SFTPA2Q8IWL1 248 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 SLC25A45Q8N413 288 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 TBC1D19Q8N5T2 526 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 GPR156Q8NFN8 814 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 OR2L3Q8NG85 312 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 HUS1BQ8NHY5 278 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 CMTM5Q96DZ9 223 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 METTL2AQ96IZ6 378 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 MARK4Q96L34 752 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 OR2A14Q96R47 310 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 HBEGFQ99075 208 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 MTERF1Q99551 399 aaKnown RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 ACPTQ9BZG2 426 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 RHBGQ9H310 441 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 LRTM1Q9HBL6 345 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 CUEDC1Q9NWM3 386 aaPredicted RBP11.32□□□□□ -0.6
CLN6-223ENST00000637823 NMRK1Q9NWW6 199 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 VPS29Q9UBQ0 182 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 GIMAP2Q9UG22 337 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 TAGLN3Q9UI15 199 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 PPT2Q9UMR5 302 aa11.32□□□□□ -0.6
CLN6-223ENST00000637823 PCDH15Q96QU1 1955 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 A0A1B0GTQ1 180 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 TRBC2A0A5B9 178 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 ANKDD1BA6NHY2 528 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 C2orf74A8MZ97 194 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 PSMD12O00232 456 aaPredicted RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 PPM1DO15297 605 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 TNFSF14O43557 240 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 CFIP05156 583 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 THRAP10827 490 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 POLR2CP19387 275 aaPredicted RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 CALB2P22676 271 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 PTX3P26022 381 aaPredicted RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 PIK3R1P27986 724 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 GRK3P35626 688 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 RASSF2P50749 326 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 MNAT1P51948 309 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 MAZP56270 477 aaKnown RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 YBX1P67809 324 aaKnown RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 HMGCS1Q01581 520 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 MEF2AQ02078 507 aaPredicted RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 BIRC2Q13490 618 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 DDX39BQ13838 428 aaKnown RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 NAA25Q14CX7 972 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 HERC3Q15034 1050 aa11.31□□□□□ -0.6
CLN6-223ENST00000637823 RBBP5Q15291 538 aaKnown RBP11.31□□□□□ -0.6
CLN6-223ENST00000637823 SHBQ15464 509 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms