RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CNOT10Q9H9A5 744 aaKnown RBP17.35■□□□□ 0.37
CLN3-239ENST00000628023 CUEDC1Q9NWM3 386 aaPredicted RBP17.35■□□□□ 0.37
CLN3-239ENST00000628023 SNX7Q9UNH6 387 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 PIEZO2Q9H5I5 2752 aa17.35■□□□□ 0.37
CLN3-239ENST00000628023 A0A0J9YVX5 310 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 E7EQ34 232 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 GOLGA8RI6L899 631 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 UBXN8O00124 270 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 RFPL1O75677 317 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 SCRG1O75711 98 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 OR2B3O76000 313 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 IPO13O94829 963 aaKnown RBP17.34■□□□□ 0.37
CLN3-239ENST00000628023 KIAA0754O94854 1291 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 CDH1P12830 882 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 GFAPP14136 432 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 HRH2P25021 359 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 PCM1Q15154 2024 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 C18orf21Q32NC0 220 aaPredicted RBP17.34■□□□□ 0.37
CLN3-239ENST00000628023 PWWP2BQ6NUJ5 590 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 THOC6Q86W42 341 aaKnown RBP17.34■□□□□ 0.37
CLN3-239ENST00000628023 MCATQ8IVS2 390 aaKnown RBP17.34■□□□□ 0.37
CLN3-239ENST00000628023 DNAJC22Q8N4W6 341 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 FCRL4Q96PJ5 515 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 ATOH8Q96SQ7 321 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 SELENOSQ9BQE4 189 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 SEMA4CQ9C0C4 833 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 EURLQ9NYK6 297 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 PLAAQ9Y263 795 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 SLC22A14Q9Y267 594 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 KLK4Q9Y5K2 254 aa17.34■□□□□ 0.37
CLN3-239ENST00000628023 IGKV1-8A0A0C4DH67 115 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 OR2A25A4D2G3 310 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 H7BY64 318 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 EFSO43281 561 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 NRP2O60462 931 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 CPNE3O75131 537 aaKnown RBP17.33■□□□□ 0.36
CLN3-239ENST00000628023 ZIC2O95409 532 aaPredicted RBP17.33■□□□□ 0.36
CLN3-239ENST00000628023 TIAF1O95411 115 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 ITGB2P05107 769 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 RBP1P09455 135 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 EZRP15311 586 aaKnown RBP17.33■□□□□ 0.36
CLN3-239ENST00000628023 ZNF28P17035 718 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 ATP1A2P50993 1020 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 FBXO48Q5FWF7 155 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 RIBC1Q8N443 379 aaPredicted RBP17.33■□□□□ 0.36
CLN3-239ENST00000628023 ACMSDQ8TDX5 336 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 PRAP1Q96NZ9 151 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 ZFYVE21Q9BQ24 234 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 ZNF358Q9NW07 568 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 CPSF2Q9P2I0 782 aaKnown RBP17.33■□□□□ 0.36
CLN3-239ENST00000628023 XPR1Q9UBH6 696 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 SH2B3Q9UQQ2 575 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 KCNE2Q9Y6J6 123 aa17.33■□□□□ 0.36
CLN3-239ENST00000628023 FLNBO75369 2602 aaKnown RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 ZSCAN9O15535 394 aaPredicted RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 HCRTR1O43613 425 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 CCNT2O60583 730 aaKnown RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 RAD1O60671 282 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 CTSVO60911 334 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 EIF2S1P05198 315 aaKnown RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 PYGBP11216 843 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 SFTPCP11686 197 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 NPPBP16860 134 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 GRK3P35626 688 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 GDF5P43026 501 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 SLC6A12P48065 614 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 KCNC1P48547 511 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 HSPA7P48741 367 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 CCR8P51685 355 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 RASA2Q15283 850 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 ZXDCQ2QGD7 858 aaPredicted RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 TECRLQ5HYJ1 363 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 ZNF425Q6IV72 752 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 RNF44Q7L0R7 432 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 TMPRSS11BQ86T26 416 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 PAQR7Q86WK9 346 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 SNX31Q8N9S9 440 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 SLC5A11Q8WWX8 675 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 RERGQ96A58 199 aaPredicted RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 GPR78Q96P69 363 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 OR4K3Q96R72 315 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 TMEM79Q9BSE2 394 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 TMEM184CQ9NVA4 438 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 DNAJC11Q9NVH1 559 aa17.32■□□□□ 0.36
CLN3-239ENST00000628023 TMEM184BQ9Y519 407 aaPredicted RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 HEMK1Q9Y5R4 338 aaPredicted RBP17.32■□□□□ 0.36
CLN3-239ENST00000628023 SDK2Q58EX2 2172 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 HAT1O14929 419 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 TAPBPO15533 448 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 SMIM24O75264 130 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 STK16O75716 305 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 NTRK1P04629 796 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 GABRA4P48169 554 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 VSX2P58304 361 aaPredicted RBP17.31■□□□□ 0.36
CLN3-239ENST00000628023 CDC16Q13042 620 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 PFKFB4Q16877 469 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 TCTE1Q5JU00 501 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 PRAMEF17Q5VTA0 474 aa17.31■□□□□ 0.36
CLN3-239ENST00000628023 TLDC1Q6P9B6 456 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms