RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PCDHGA6Q9Y5G7 932 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 SNX8Q9Y5X2 465 aa10.51□□□□□ -0.73
UPF3A-212ENST00000619079 TRBV5-3A0A0A0MS03 114 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 LEUTXA8MZ59 168 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 B4DXG7 233 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PITPNM1O00562 1244 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 E2F3O00716 465 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 DPM1O60762 260 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF682O95780 498 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ACADMP11310 421 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PSKH1P11801 424 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 IL32P24001 234 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 HOXC13P31276 330 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 UQCRC1P31930 480 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CCR1P32246 355 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 RENBPP51606 427 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 STC1P52823 247 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 MAP3K7CLP57077 242 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 TOR2AQ5JU69 321 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 FAM122CQ6P4D5 195 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PLPP6Q8IY26 295 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 TMEM132CQ8N3T6 1108 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 TOP6BLQ8N6T0 577 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 EFHBQ8N7U6 833 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 UBASH3BQ8TF42 649 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 GGHQ92820 318 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 MCCC1Q96RQ3 725 aaPredicted RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CPPED1Q9BRF8 314 aaPredicted RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 MMP28Q9H239 520 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 RNF167Q9H6Y7 350 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CATSPERZQ9NTU4 200 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 MAT2BQ9NZL9 334 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 VPS4AQ9UN37 437 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ABCG2Q9UNQ0 655 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 TRPV2Q9Y5S1 764 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 OR51F1A6NGY5 319 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 BTN3A1O00481 513 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CLDN5O00501 218 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 GSTM1P09488 218 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CNPP09543 421 aaKnown RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF30P17039 623 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 DDX5P17844 614 aaKnown RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 EPHA2P29317 976 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 GGT2P36268 569 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PXNP49023 591 aaPredicted RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 AGTR2P50052 363 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 RAB25P57735 213 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ERVPABLB-1P60509 514 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 CDC42EP1Q00587 391 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 RIPPLY1Q0D2K3 151 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 LAPTM4AQ15012 233 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ANGPT1Q15389 498 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 SOWAHCQ53LP3 525 aaPredicted RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 SLC35F1Q5T1Q4 408 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PAQR3Q6TCH7 311 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 GDPGP1Q6ZNW5 385 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 DEFB128Q7Z7B8 93 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 ZNF605Q86T29 641 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 AMIGO1Q86WK6 493 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 LINC01465Q8N7H1 131 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 YIPF7Q8N8F6 280 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 PNPLA1Q8N8W4 532 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 FAM181AQ8N9Y4 354 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 TRIM62Q9BVG3 475 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 FNIP2Q9P278 1114 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 EIF3KQ9UBQ5 218 aaKnown RBP10.5□□□□□ -0.73
UPF3A-212ENST00000619079 MUTYHQ9UIF7 546 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 NEU3Q9UQ49 428 aa10.5□□□□□ -0.73
UPF3A-212ENST00000619079 NCF1BA6NI72 391 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 NCF1CA8MVU1 366 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CCL22O00626 93 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SEC14L5O43304 696 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RGS14O43566 566 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 LDB2O43679 373 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RPP40O75818 363 aaKnown RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 OR7A10O76100 309 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 WDR47O94967 919 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TIMP1P01033 207 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 C9P02748 559 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 HSMCR30P0CW71 290 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CYP2A6P11509 494 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-212ENST00000619079 SLC19A1P41440 591 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 GZMMP51124 257 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RORCP51449 518 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 MAPK12P53778 367 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ITGA1P56199 1179 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 IRF3Q14653 427 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 BTBD16Q32M84 506 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TTLL9Q3SXZ7 439 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 RAP1GAP2Q684P5 730 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PAQR9Q6ZVX9 377 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 TRIM69Q86WT6 500 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 GPSM1Q86YR5 675 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ZZZ3Q8IYH5 903 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 PGBD3Q8N328 593 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CARNMT1Q8N4J0 409 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 GDPD1Q8N9F7 314 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 DENND6BQ8NEG7 585 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 ENKURQ8TC29 256 aa10.49□□□□□ -0.73
UPF3A-212ENST00000619079 CHTF18Q8WVB6 975 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms