RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CPNE1Q99829 537 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 HIST1H2AJQ99878 128 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 C17orf62Q9BQA9 187 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 MCMBPQ9BTE3 642 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 H2AFJQ9BTM1 129 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 CUTCQ9NTM9 273 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 ZDHHC18Q9NUE0 388 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 ARL15Q9NXU5 204 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 UTP6Q9NYH9 597 aaKnown RBP15.29■□□□□ 0.04
BRCA1-228ENST00000618469 IFT80Q9P2H3 777 aaPredicted RBP15.29■□□□□ 0.04
BRCA1-228ENST00000618469 IKZF3Q9UKT9 509 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 CACNA1DQ01668 2161 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 ANKRD12Q6UB98 2062 aa15.29■□□□□ 0.04
BRCA1-228ENST00000618469 HEATR5BQ9P2D3 2071 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 LOC105369274A0A096LPK9 316 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 LOC102723532A0A0G2JNH3 316 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 HAT1O14929 419 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 DSCR3O14972 297 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 SRPX2O60687 465 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 ENO2P09104 434 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 EZRP15311 586 aaKnown RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 NR1D1P20393 614 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 GP5P40197 560 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 AP1S2P56377 157 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 EFTUD2Q15029 972 aaKnown RBP eCLIP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 KBTBD12Q3ZCT8 623 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 NKAIN1Q4KMZ8 207 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 WASHC2DQ5SRD0 308 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 SBSNQ6UWP8 590 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 CEP97Q8IW35 865 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 OR4N4Q8N0Y3 316 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 NKAPQ8N5F7 415 aaKnown RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 METTL27Q8N6F8 245 aaPredicted RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 PPM1NQ8N819 430 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 DHRS4Q9BTZ2 278 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 TRIM54Q9BYV2 358 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 SYNPO2LQ9H987 977 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 CAB39LQ9H9S4 337 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 GPAMQ9HCL2 828 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 SH2B3Q9UQQ2 575 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 MTO1Q9Y2Z2 717 aaKnown RBP15.28■□□□□ 0.04
BRCA1-228ENST00000618469 KCNMB2Q9Y691 235 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 NOTCH2Q04721 2471 aa15.28■□□□□ 0.04
BRCA1-228ENST00000618469 FITM1A5D6W6 292 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 H0YGG7 62 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 CDC7O00311 574 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 GUCA1CO95843 209 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 RECKO95980 971 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 C1QAP02745 245 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 ITGAXP20702 1163 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 CCND1P24385 295 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 ARF3P61204 181 aaPredicted RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 POU4F1Q01851 419 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 ILF2Q12905 390 aaKnown RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 NAE1Q13564 534 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 YOD1Q5VVQ6 348 aaPredicted RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 CPZQ66K79 652 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 PLD3Q8IV08 490 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 DTWD1Q8N5C7 304 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 CSNK1A1LQ8N752 337 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 C9orf43Q8TAL5 461 aaPredicted RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 FBF1Q8TES7 1133 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 ANKRD49Q8WVL7 239 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 RERGQ96A58 199 aaPredicted RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 GPR22Q99680 433 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 PCBD2Q9H0N5 130 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 POPDC3Q9HBV1 291 aa15.27■□□□□ 0.04
BRCA1-228ENST00000618469 MTRF1LQ9UGC7 380 aaKnown RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 DMGDHQ9UI17 866 aaKnown RBP15.27■□□□□ 0.04
BRCA1-228ENST00000618469 MDC1Q14676 2089 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 HYKKA2RU49 373 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 H7BY64 318 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PHGDHO43175 533 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 CNOT3O75175 753 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 RFPL1O75677 317 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 FOLR3P41439 243 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PMS2P54278 862 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 MLLT10P55197 1068 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 FOXL2P58012 376 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 USP10Q14694 798 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 SLMAPQ14BN4 828 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PPP1R3AQ16821 1122 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 CAPN13Q6MZZ7 669 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 FBXO42Q6P3S6 717 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 FRA10AC1Q70Z53 315 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 CYS1Q717R9 158 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 C17orf64Q86WR6 236 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 RAB43Q86YS6 212 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 ADAMTS17Q8TE56 1095 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 THAP4Q8WY91 577 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PYCR2Q96C36 320 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 TSPAN17Q96FV3 270 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PDLIM5Q96HC4 596 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 CABS1Q96KC9 395 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 C10orf90Q96M02 699 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 PRAP1Q96NZ9 151 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 SGPP1Q9BX95 441 aa15.26■□□□□ 0.03
BRCA1-228ENST00000618469 UNKQ9C0B0 810 aaKnown RBP15.26■□□□□ 0.03
BRCA1-228ENST00000618469 ENAMQ9NRM1 1142 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms