RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 KLHL24Q6TFL4 600 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PRSS55Q6UWB4 352 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 QSOX2Q6ZRP7 698 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 FBXL6Q8N531 539 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PPP1R14AQ96A00 147 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 POLR1EQ9GZS1 481 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MTFR1LQ9H019 292 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 RPS10P5Q9NQ39 176 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 C19orf12Q9NSK7 152 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 RBFOX1Q9NWB1 397 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 FAM50BQ9Y247 325 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 OR6C74A6NCV1 312 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LYRM1O43325 122 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ATP6AP2O75787 350 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SCGNO76038 276 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 STAU1O95793 577 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 KDELR1P24390 212 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 G0S2P27469 103 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PTPN6P29350 595 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GRIK5Q16478 980 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SLC30A8Q8IWU4 369 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 RNF139Q8WU17 664 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 TMEM203Q969S6 136 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 OR52E6Q96RD3 313 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GATA5Q9BWX5 397 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LYRM2Q9NU23 88 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GPSM3Q9Y4H4 160 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 CDH10Q9Y6N8 788 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MGAT1P26572 445 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 RRAS2P62070 204 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PROX2Q3B8N5 592 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 FBXL19Q6PCT2 694 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 C5orf46Q6UWT4 87 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SZRD1Q7Z422 152 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LINC00518Q8N0U6 118 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LMAN2LQ9H0V9 348 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LIPT1Q9Y234 373 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 CITO14578 2027 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LRRC37A3O60309 1634 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 NAP1L6A6NFF2 107 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 BHMG1C9JSJ3 638 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 D6RAR5 112 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ST8SIA5O15466 376 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 RDH16O75452 317 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 C1RP00736 705 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GADD45AP24522 165 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PTBP1P26599 531 aaKnown RBP eCLIP4.83□□□□□ -1.641e-7■■■■■ 29.3
VPS13D-213ENST00000613099 CCR4P51679 360 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ST3GAL4Q11206 333 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GRM3Q14832 879 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 AANATQ16613 207 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 NTRK2Q16620 822 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 GPSM1Q86YR5 675 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LGI2Q8N0V4 545 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ZDHHC1Q8WTX9 485 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 DCAF4Q8WV16 495 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PCDHB18PQ96TA0 734 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 CKLFQ9UBR5 152 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PALLDQ8WX93 1383 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 BORCS7-ASMTA0A0B4J1R7 106 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MGAT4DA6NG13 374 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 CLDN24A6NM45 220 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 NARSO43776 548 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 DFFBO76075 338 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 HSPA7P48741 367 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 TMEM119Q4V9L6 283 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 PRSS42Q7Z5A4 293 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 LYSMD2Q8IV50 215 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 OR2L8Q8NGY9 312 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 DNAJB3Q8WWF6 145 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 NECAB3Q96P71 396 aaPredicted RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MED18Q9BUE0 208 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 NLKQ9UBE8 527 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 A0A0D9SG52 128 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 BTBD17A6NE02 478 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 FPR1P21462 350 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 TCEAL1Q15170 157 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MFSD3Q96ES6 412 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 OR10A4Q9H209 315 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SLC52A2Q9HAB3 445 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SALL3Q9BXA9 1300 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 C20orf202A1L168 122 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ZNF487B1APH4 448 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 J3QR89 54 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 EPB42P16452 691 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MAPK8P45983 427 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ATP4BP51164 291 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 TNFRSF17Q02223 184 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 KCNJ11Q14654 390 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SLC9B2Q86UD5 537 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 APOBEC3FQ8IUX4 373 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 ATP6V1C2Q8NEY4 427 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 IPMKQ8NFU5 416 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 DCPSQ96C86 337 aaKnown RBP4.83□□□□□ -1.64
VPS13D-213ENST00000613099 HS6ST2Q96MM7 605 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 MAPKAP1Q9BPZ7 522 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 SPNS1Q9H2V7 528 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 OXSMQ9NWU1 459 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 FOCADQ5VW36 1801 aa4.83□□□□□ -1.64
VPS13D-213ENST00000613099 COL14A1Q05707 1796 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms