RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TMEM86AQ8N2M4 240 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 AVL9Q8NBF6 648 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 FAM46DQ8NEK8 389 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 FDCSPQ8NFU4 85 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 OR6C4Q8NGE1 309 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 XAGE5Q8WWM1 108 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 KIFAP3Q92845 792 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 SNX21Q969T3 373 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 R3HDM4Q96D70 268 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 BMFQ96LC9 184 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 TEFMQ96QE5 360 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 SPAG5Q96R06 1193 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 NUDT22Q9BRQ3 303 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 NUDT9Q9BW91 350 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 PLA2G12AQ9BZM1 189 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ING2Q9H160 280 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 CHMP4BQ9H444 224 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 XAB2Q9HCS7 855 aaKnown RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 HEYLQ9NQ87 328 aaPredicted RBP4.25□□□□□ -1.73
LINC00540-201ENST00000611481 FGF21Q9NSA1 209 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM30AQ9NV96 361 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 B3GNT3Q9Y2A9 372 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 PLEKHA6Q9Y2H5 1048 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF510Q9Y2H8 683 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 DERAQ9Y315 318 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 SNX9Q9Y5X1 595 aa4.25□□□□□ -1.73
LINC00540-201ENST00000611481 TRGV8A0A0C4DH27 118 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 EDDM13A0A1B0GTR0 161 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 C17orf113A0A1B0GUU1 675 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CLDN5O00501 218 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CCL21O00585 134 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 SLC16A4O15374 487 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 DNPH1O43598 174 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CCNT1O60563 726 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ERAL1O75616 437 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 BAG4O95429 457 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 IGHDP01880 384 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 STMN1P16949 149 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 DNASE1P24855 282 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 HOXD9P28356 352 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ATP5DP30049 168 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CASP14P31944 242 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CD70P32970 193 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PSMC2P35998 433 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 NNMTP40261 264 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PBX1P40424 430 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PNPLA4P41247 253 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 MSH2P43246 934 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 DGKQP52824 942 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 THOP1P52888 689 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 RAPSNQ13702 412 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ARHGEF7Q14155 803 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ZNF235Q14590 738 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 GPR68Q15743 365 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ODF2Q5BJF6 829 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 FAXCQ5TGI0 409 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PODNL1Q6PEZ8 512 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 XKRXQ6PP77 449 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 KYAT3Q6YP21 454 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 C16orf47Q6ZP98 133 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ZSCAN2Q7Z7L9 614 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 SLC47A2Q86VL8 602 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 LCA5Q86VQ0 697 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 HORMAD1Q86X24 394 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CD302Q8IX05 232 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 TAGAPQ8N103 731 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 GOT1L1Q8NHS2 421 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 INPP5DQ92835 1189 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 FAM131CQ96AQ9 280 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 BICD1Q96G01 975 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CALML4Q96GE6 196 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 DESI2Q9BSY9 194 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 ITPAQ9BY32 194 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 TTYH3Q9C0H2 523 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PCDHAC1Q9H158 963 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 LIME1Q9H400 295 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CHODLQ9H9P2 273 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 POT1Q9NUX5 634 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 SEPT11Q9NVA2 429 aaKnown RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 HESX1Q9UBX0 185 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 LPAR3Q9UBY5 353 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 RASAL2Q9UJF2 1139 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 APPL1Q9UKG1 709 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CDH9Q9ULB4 789 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 NAP1L2Q9ULW6 460 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 PCDHGB4Q9UN71 923 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 DTNAQ9Y4J8 743 aa4.24□□□□□ -1.73
LINC00540-201ENST00000611481 TMEM184BQ9Y519 407 aaPredicted RBP4.24□□□□□ -1.73
LINC00540-201ENST00000611481 CHD3Q12873 2000 aaKnown RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 SERINC4A6NH21 518 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 E7EVH7 732 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 RAD51BO15315 384 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 PHF1O43189 567 aaPredicted RBP4.23□□□□□ -1.73
LINC00540-201ENST00000611481 B4GAT1O43505 415 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 FAM189A1O60320 539 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 MED24O75448 989 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CRLF1O75462 422 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 CEACAM4O75871 244 aa4.23□□□□□ -1.73
LINC00540-201ENST00000611481 RASSF9O75901 435 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms