RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ARMC3Q5W041 872 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 NIPAL1Q6NVV3 410 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 TMEM205Q6UW68 189 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PPP1R21Q6ZMI0 780 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SHISA6Q6ZSJ9 500 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SDCCAG8Q86SQ7 713 aaPredicted RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 VSTM4Q8IW00 320 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 GHDCQ8N2G8 530 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SLC5A8Q8N695 610 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SIRT6Q8N6T7 355 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CSNK1A1LQ8N752 337 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 POGLUT1Q8NBL1 392 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PPHLN1Q8NEY8 458 aaKnown RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 OR2L3Q8NG85 312 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CFAP61Q8NHU2 1237 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 SMPDL3AQ92484 453 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PSMF1Q92530 271 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 TAAR6Q96RI8 345 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CHP1Q99653 195 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MIPEPQ99797 713 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 GORASP1Q9BQQ3 440 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 TRIM8Q9BZR9 551 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 DRC3Q9H069 523 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 RBSNQ9H1K0 784 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 MCCC2Q9HCC0 563 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 PRDM9Q9NQV7 894 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 CATSPERZQ9NTU4 200 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 STMN3Q9NZ72 180 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 IMPACTQ9P2X3 320 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 ITGB1BP2Q9UKP3 347 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 TTC7AQ9ULT0 858 aaPredicted RBP5.98□□□□□ -1.45
CUX1-220ENST00000607092 PLAGL1Q9UM63 463 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 HYOU1Q9Y4L1 999 aa5.98□□□□□ -1.45
CUX1-220ENST00000607092 AKAP9Q99996 3911 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 CACNA1CQ13936 2221 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MED13LQ71F56 2210 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 A0A0J9YVX5 310 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 FAM221AA4D161 298 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 SYNDIG1LA6NDD5 238 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 E9PLN8 166 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 CCL22O00626 93 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 PRICKLE3O43900 615 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 CTSVO60911 334 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 ALOX12BO75342 701 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 NDUFS3O75489 264 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 C1orf105O95561 183 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 GOT2P00505 430 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 CATP04040 527 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 CTSBP07858 339 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TPBGLP0DKB5 382 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 ABOP16442 354 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TPH1P17752 444 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 RPS3P23396 243 aaKnown RBP eCLIP5.97□□□□□ -1.451e-7■■■■□ 20.3
CUX1-220ENST00000607092 MCM3P25205 808 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 AOAHP28039 575 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 RPA3P35244 121 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 SLC26A3P40879 764 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 CSE1LP55060 971 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 NAP1L1P55209 391 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 ALDH6A1Q02252 535 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 ACVR1Q04771 509 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 SPARCL1Q14515 664 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 PRTGQ2VWP7 1150 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TTLL9Q3SXZ7 439 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TSTD2Q5T7W7 516 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 PLAG1Q6DJT9 500 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TMEM211Q6ICI0 200 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MRNIPQ6NTE8 343 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 C4orf22Q6V702 233 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 Q6ZPB1 254 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 NEK10Q6ZWH5 1172 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 PCGF5Q86SE9 256 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 SPPL2CQ8IUH8 684 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 FAM20CQ8IXL6 584 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 PRSS58Q8IYP2 241 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 SYCE1Q8N0S2 351 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 FAM71DQ8N9W8 422 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 CHDHQ8NE62 594 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 ARMC2Q8NEN0 867 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 OR2A1Q8NGT9 310 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 M1APQ8TC57 530 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 CA5BP1Q8WTZ4 195 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 ASB5Q8WWX0 329 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 HDAC10Q969S8 669 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TMEM125Q96AQ2 219 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 C8orf44Q96CB5 159 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MMABQ96EY8 250 aaPredicted RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 IMMP1LQ96LU5 166 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 GPR137Q96N19 417 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 TCF12Q99081 682 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 VKORC1Q9BQB6 163 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 DPH7Q9BTV6 452 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MENTQ9BUN1 341 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 ENKD1Q9H0I2 346 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MRPS30Q9NP92 439 aaKnown RBP5.97□□□□□ -1.45
CUX1-220ENST00000607092 PLA2G3Q9NZ20 509 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 KLHL20Q9Y2M5 609 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 ZNF835Q9Y2P0 537 aa5.97□□□□□ -1.45
CUX1-220ENST00000607092 MEMO1Q9Y316 297 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms