RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 ITM2AO43736 263 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 PSIP1O75475 530 aaKnown RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 IPO13O94829 963 aaKnown RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 SIX3O95343 332 aaPredicted RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 C9P02748 559 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 S100BP04271 92 aaPredicted RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 C8GP07360 202 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 ARRB2P32121 409 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 PRKAA2P54646 552 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 NAGLUP54802 743 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 DNAJB13P59910 316 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 DMPKQ09013 629 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 SP140Q13342 867 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 UBAP2LQ14157 1087 aaKnown RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 DEFB109BQ30KR1 87 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 C18orf21Q32NC0 220 aaPredicted RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 TUBB8Q3ZCM7 444 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 LACTB2Q53H82 288 aaPredicted RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 ATG16L1Q676U5 607 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 RASGRP3Q8IV61 690 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 SLC22A9Q8IVM8 553 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 CCNYL1Q8N7R7 359 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 SPDYE1Q8NFV5 336 aaPredicted RBP12.23□□□□□ -0.45
UPF1-208ENST00000600012 OR6Y1Q8NGX8 325 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 RAB3IL1Q8TBN0 382 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 ASB11Q8WXH4 323 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 CHMP6Q96FZ7 201 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 ABHD17AQ96GS6 310 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 RMDN2Q96LZ7 410 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 EGFL8Q99944 293 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 ULBP3Q9BZM4 244 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 PRDM8Q9NQV8 689 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 CIDEBQ9UHD4 219 aa12.23□□□□□ -0.45
UPF1-208ENST00000600012 PCM1Q15154 2024 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 CCDC189A1A4V9 331 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 GFYI3L273 518 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 SLC16A5O15375 505 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 KLK8O60259 260 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 EDF1O60869 148 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 H2AFYO75367 372 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 UBXN7O94888 489 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 MATN4O95460 622 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 VIPP01282 170 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 CATP04040 527 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 ENO2P09104 434 aaPredicted RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 SLC35G4P0C7Q5 338 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 VCLP18206 1134 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 XRCC1P18887 633 aaPredicted RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 CYP2A7P20853 494 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 DRD4P21917 467 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 RPL10P27635 214 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 EEF1DP29692 281 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 SLC1A6P48664 564 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 AGTR2P50052 363 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 GFERP55789 205 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 ABCE1P61221 599 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 PLOD1Q02809 727 aaPredicted RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 FOXM1Q08050 763 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 ASPHQ12797 758 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 SF3A3Q12874 501 aaKnown RBP eCLIP12.22□□□□□ -0.455e-7■■■□□ 14.8
UPF1-208ENST00000600012 RPA4Q13156 261 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 SETDB1Q15047 1291 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 IGFBP7Q16270 282 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 CCSMST1Q4G0I0 132 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 UNC50Q53HI1 259 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 ZNF678Q5SXM1 525 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 METRNLQ641Q3 311 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 DUS1LQ6P1R4 473 aaKnown RBP12.22□□□□□ -0.45
UPF1-208ENST00000600012 TMEM26Q6ZUK4 368 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 TRIM48Q8IWZ4 208 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 PDPRQ8NCN5 879 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 ESAMQ96AP7 390 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 CCDC126Q96EE4 140 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 FOPNLQ96NB1 174 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 C20orf27Q9GZN8 174 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 GSTO2Q9H4Y5 243 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 PARVBQ9HBI1 364 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 PSD3Q9NYI0 1048 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 WWOXQ9NZC7 414 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 TMCO1Q9UM00 188 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 ASB1Q9Y576 335 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 PCDHB3Q9Y5E6 796 aa12.22□□□□□ -0.45
UPF1-208ENST00000600012 COL12A1Q99715 3063 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 KLHL33A6NCF5 533 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 PABPN1LA6NDY0 278 aaKnown RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 PRR19A6NJB7 356 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 PDZK1P1A8MUH7 402 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 TMEM114B3SHH9 223 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 STX16-NPEPL1H3BU86 382 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 STX16O14662 325 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 TAPBPO15533 448 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 SNNO75324 88 aaPredicted RBP12.21□□□□□ -0.45
UPF1-208ENST00000600012 C1orf105O95561 183 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 HSPA4LO95757 839 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 CHRNGP07510 517 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 AMD1P17707 334 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 TSPAN8P19075 237 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 IMPDH1P20839 514 aa12.21□□□□□ -0.45
UPF1-208ENST00000600012 GRK2P25098 689 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms