RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 KRT87PA6NCN2 255 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 GOLGA8MH3BSY2 632 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 PGRMC1O00264 195 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 NDUFS3O75489 264 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CRYABP02511 175 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 EIF2S1P05198 315 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 MYBL2P10244 700 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 ERVK-10P10266 1014 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 POU3F2P20265 443 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 PSMB5P28074 263 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CMPK1P30085 196 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 MAGEA3P43357 314 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 KCNK10P57789 538 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 DSG2Q14126 1118 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 GBX1Q14549 363 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CCSMST1Q4G0I0 132 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 MTFR2Q6P444 385 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CNSTQ6PJW8 725 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 GFRALQ6UXV0 394 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CENPUQ71F23 418 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 OTOAQ7RTW8 1153 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 LAPTM4BQ86VI4 370 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 PRSS58Q8IYP2 241 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 NAT8LQ8N9F0 302 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 MCUQ8NE86 351 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 BRIX1Q8TDN6 353 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 ITLN2Q8WWU7 325 aaPredicted RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 C10orf90Q96M02 699 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 SERPINB12Q96P63 405 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 TGIF2Q9GZN2 237 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 CHST11Q9NPF2 352 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 C14orf105Q9NVL8 296 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 RIC8BQ9NVN3 520 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 PLA2G3Q9NZ20 509 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 ABI3Q9P2A4 366 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 SUCOQ9UBS9 1254 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 SNX12Q9UMY4 172 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 RUVBL2Q9Y230 463 aaKnown RBP11.9□□□□□ -0.5
TRIM28-212ENST00000597995 NFS1Q9Y697 457 aa11.9□□□□□ -0.5
TRIM28-212ENST00000597995 OTOGQ6ZRI0 2925 aa11.9□□□□□ -0.51
TRIM28-212ENST00000597995 CSMD1Q96PZ7 3565 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 ZCWPW2A0A1B0GU75 182 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 IDSB3KWA1 339 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 H0YGG7 62 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 NIPSNAP2O75323 286 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 VPS26AO75436 327 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 WFS1O76024 890 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 RASAL1O95294 804 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 MATN4O95460 622 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 MLNP12872 115 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 ICAM2P13598 275 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 FMO4P31512 558 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 PTGER4P35408 488 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 SLC26A3P40879 764 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 BDKRB1P46663 353 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 EIF3BP55884 814 aaKnown RBP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 ARF3P61204 181 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 RELAQ04206 551 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 ANKRD20A4Q4UJ75 823 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 GARNL3Q5VVW2 1013 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 TMEM207Q6UWW9 146 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF808Q8N4W9 903 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 SKA2Q8WVK7 121 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 CABS1Q96KC9 395 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 SIGLEC10Q96LC7 697 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 DPH7Q9BTV6 452 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 MKKSQ9NPJ1 570 aaPredicted RBP11.89□□□□□ -0.51
TRIM28-212ENST00000597995 TRPC4Q9UBN4 977 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 CRYL1Q9Y2S2 319 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 MED16Q9Y2X0 877 aa11.89□□□□□ -0.51
TRIM28-212ENST00000597995 TRGV8A0A0C4DH27 118 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 FAM237BA0A1B0GVD1 139 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 SDR42E2A6NKP2 422 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 TXNDC9O14530 226 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ZSCAN12O43309 604 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 NRP2O60462 931 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 HEXBP07686 556 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ERGP11308 486 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 OGNP20774 298 aaKnown RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ATP5DP30049 168 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 FNTAP49354 379 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ADARP55265 1226 aaKnown RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 SARNPP82979 210 aaKnown RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ARHGAP19Q14CB8 494 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ARMC3Q5W041 872 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 MRNIPQ6NTE8 343 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 NEPROQ6NW34 567 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 CASC4Q6P4E1 433 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 RPTNQ6XPR3 784 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 BNC2Q6ZN30 1099 aaPredicted RBP11.88□□□□□ -0.51
TRIM28-212ENST00000597995 MRGPRGQ86SM5 289 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 CILP2Q8IUL8 1156 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 DENND6AQ8IWF6 608 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 OTUD6BQ8N6M0 293 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 OR9A1PQ8NGU1 263 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 SUN3Q8TAQ9 357 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 SMPDL3AQ92484 453 aa11.88□□□□□ -0.51
TRIM28-212ENST00000597995 ZNF669Q96BR6 464 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms