RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PCYOX1L	Q8NBM8	494 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	OR9I1	Q8NGQ6	314 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	EFHD1	Q9BUP0	239 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	FARSB	Q9NSD9	589 aa	Known RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	DNAJC11	Q9NVH1	559 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	EBF1	Q9UH73	591 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	DUSP12	Q9UNI6	340 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	FFAR3	O14843	346 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	SLC31A1	O15431	190 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	GPR42	O15529	346 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	CLDN9	O95484	217 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	CEACAM5	P06731	702 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	FOSL2	P15408	326 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	NUDT2	P50583	147 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	DIO3	P55073	304 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	GGTA1P	Q4G0N0	100 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	C6orf136	Q5SQH8	315 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	METRNL	Q641Q3	311 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	PDZD3	Q86UT5	571 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	FUNDC1	Q8IVP5	155 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	L3MBTL4	Q8NA19	623 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	OR56A3	Q8NH54	315 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	USP7	Q93009	1102 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	OR4K3	Q96R72	315 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	MYOC	Q99972	504 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	APOO	Q9BUR5	198 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	C1QTNF7	Q9BXJ2	289 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	YTHDF1	Q9BYJ9	559 aa	Known RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	SLC29A3	Q9BZD2	475 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	RPF2	Q9H7B2	306 aa	Known RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	SDR39U1	Q9NRG7	319 aa	Predicted RBP	14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	DOLK	Q9UPQ8	538 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	SLC17A4	Q9Y2C5	497 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	GPR45	Q9Y5Y3	372 aa		14.9	□□□□□ -0.02
DDX39A-209	ENST00000589318	MYOCOS	A0A1B0GUC4	107 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	MAN2B1	O00754	1011 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	LSM1	O15116	133 aa	Known RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	KMO	O15229	486 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	JAK1	P23458	1154 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	MRPL19	P49406	292 aa	Known RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	NAE1	Q13564	534 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	ANKDD1A	Q495B1	522 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	AGK	Q53H12	422 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	ZNF362	Q5T0B9	420 aa	Predicted RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	NANOGP8	Q6NSW7	305 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	THOC6	Q86W42	341 aa	Known RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	TRIM69	Q86WT6	500 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	ZNF480	Q8WV37	535 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	ATL1	Q8WXF7	558 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	RCN3	Q96D15	328 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	DHRS1	Q96LJ7	313 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	CDRT15	Q96T59	188 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	UHRF1	Q96T88	793 aa	Predicted RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	ACTR8	Q9H981	624 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	RIC8B	Q9NVN3	520 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	AIG1	Q9NVV5	245 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	C2orf42	Q9NWW7	574 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	CCDC167	Q9P0B6	97 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	USP36	Q9P275	1121 aa	Known RBP	14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	KL	Q9UEF7	1012 aa		14.89	□□□□□ -0.03
DDX39A-209	ENST00000589318	POM121B	A6NF01	834 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	PRR19	A6NJB7	356 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	MANBA	O00462	879 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	THOP1	P52888	689 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	ERVK-8	P63133	956 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	MLLT1	Q03111	559 aa	Predicted RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	DMPK	Q09013	629 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	UNC5D	Q6UXZ4	953 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	ZNF852	Q6ZMS4	543 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	LINC00299	Q6ZSB3	139 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	TRIM46	Q7Z4K8	759 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	SPATA19	Q7Z5L4	167 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	FLCN	Q8NFG4	579 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	PNPT1	Q8TCS8	783 aa	Known RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	HMGB4	Q8WW32	186 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	EFCAB1	Q9HAE3	211 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	CXorf21	Q9HAI6	301 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	ITM2C	Q9NQX7	267 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	SUCO	Q9UBS9	1254 aa	Known RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	TRIM38	O00635	465 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	AIM2	O14862	343 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	XRCC1	P18887	633 aa	Predicted RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	CD22	P20273	847 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	HNRNPF	P52597	415 aa	Known RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	ARPC4	P59998	168 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	PCDH1	Q08174	1060 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	TRAP1	Q12931	704 aa	Known RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	GAS6	Q14393	721 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	NR1D2	Q14995	579 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	CPSF6	Q16630	551 aa	Known RBP eCLIP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	TRIM16L	Q309B1	348 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	LRRC56	Q8IYG6	542 aa	Predicted RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	OR9A1P	Q8NGU1	263 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	OR2T34	Q8NGX1	318 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	ASB9	Q96DX5	294 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	SCARF2	Q96GP6	870 aa	Predicted RBP	14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	SLC45A3	Q96JT2	553 aa		14.88	□□□□□ -0.03
DDX39A-209	ENST00000589318	BRINP2	Q9C0B6	783 aa		14.88	□□□□□ -0.03

Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms