RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CD247P20963 164 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 IL10P22301 178 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NFKBIAP25963 317 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MGAT1P26572 445 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 EEF1DP29692 281 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 LRPAP1P30533 357 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SERPINB1P30740 379 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SDC4P31431 198 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ATICP31939 592 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 IDUAP35475 653 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PTPN9P43378 593 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ARCN1P48444 511 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 MRPL19P49406 292 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 ACOT2P49753 483 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 STX1BP61266 288 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 YBX1P67809 324 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 PRAMEP78395 509 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ADARB1P78563 741 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 CCL7P80098 99 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PPP2R2BQ00005 443 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MC1RQ01726 317 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 GALNT1Q10472 559 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 BST2Q10589 180 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 ILF2Q12905 390 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 TRAF2Q12933 501 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PMS2P3Q13401 168 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TOP3AQ13472 1001 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 ENPP2Q13822 863 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FASTKQ14296 549 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 SPCS2Q15005 226 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CEBPEQ15744 281 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CYP2A13Q16696 494 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 UGP2Q16851 508 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FAM187BQ17R55 369 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 DUOXA2Q1HG44 320 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ZNF630Q2M218 657 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 XKR4Q5GH76 650 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TBCELQ5QJ74 424 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PHF19Q5T6S3 580 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NCBP2-AS2Q69YL0 99 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 LRRC8EQ6NSJ5 796 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 JMJD6Q6NYC1 403 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 CASC4Q6P4E1 433 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NAPRTQ6XQN6 538 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SCARA5Q6ZMJ2 495 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PLEKHG7Q6ZR37 379 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FAM183BPQ6ZVS7 135 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 STRA8Q7Z7C7 330 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CMC1Q7Z7K0 106 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 METTL23Q86XA0 190 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 DHFR2Q86XF0 187 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ZDHHC17Q8IUH5 632 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 LACC1Q8IV20 430 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PSTKQ8IV42 348 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 MMAAQ8IVH4 418 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 THEM5Q8N1Q8 247 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SDR16C5Q8N3Y7 309 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SFRP1Q8N474 314 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CBR4Q8N4T8 237 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TMCO5AQ8N6Q1 288 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 KIAA1958Q8N8K9 716 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 Q8NA96 180 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PAPD5Q8NDF8 572 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 OR14C36Q8NHC7 312 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PCDH19Q8TAB3 1148 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PHF10Q8WUB8 498 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 NINJ1Q92982 152 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 WBP2Q969T9 261 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MUL1Q969V5 352 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 PPWD1Q96BP3 646 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 ZNF669Q96BR6 464 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 CCDC126Q96EE4 140 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 KLHDC7BQ96G42 594 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CENPNQ96H22 339 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 VPS39Q96JC1 886 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FAM84AQ96KN4 292 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 BTN2A3PQ96KV6 586 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 UBXN10Q96LJ8 280 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 TMEM74Q96NL1 305 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NPAS2Q99743 824 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SLC29A1Q99808 456 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 FOXC2Q99958 501 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 HOPXQ9BPY8 73 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 TRMOQ9BU70 441 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MRPL4Q9BYD3 311 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 TRIM54Q9BYV2 358 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CPEB1Q9BZB8 566 aaKnown RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 XYLT2Q9H1B5 865 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SEMA6AQ9H2E6 1030 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 RHOJQ9H4E5 214 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 WDR55Q9H6Y2 383 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 LRRC40Q9H9A6 602 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 NANOGQ9H9S0 305 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 MEAF6Q9HAF1 191 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 CYP3A43Q9HB55 503 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 SYBUQ9NX95 663 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 QPCTLQ9NXS2 382 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 ACTR3BQ9P1U1 418 aa4.04□□□□□ -1.76
LIG3-211ENST00000588713 IFT80Q9P2H3 777 aaPredicted RBP4.04□□□□□ -1.76
LIG3-211ENST00000588713 SLC17A6Q9P2U8 582 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms