RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IDSP22304 550 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 SERPINB1P30740 379 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 KIR3DL1P43629 444 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TRPC1P48995 793 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 LRRC74AQ0VAA2 488 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 MTAPQ13126 283 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 GRAMD1BQ3KR37 738 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 LRIT3Q3SXY7 679 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PYCR3Q53H96 274 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CATSPEREQ5SY80 951 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 LPCAT4Q643R3 524 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 C17orf64Q86WR6 236 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TMEM132CQ8N3T6 1108 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CLHC1Q8NHS4 586 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CHTF18Q8WVB6 975 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CXorf40BQ96DE9 158 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PRPF18Q99633 342 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 SLC6A17Q9H1V8 727 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PRO3102Q9H379 93 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PRM3Q9NNZ6 103 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TM7SF3Q9NS93 570 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 FAM120CQ9NX05 1096 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 CNOT11Q9UKZ1 510 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 MMP17Q9ULZ9 603 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 DHRS12A0PJE2 317 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 LRRC72A6NJI9 287 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 H3BQ06 376 aaPredicted RBP13.68□□□□□ -0.22
LIG3-205ENST00000585941 FPGTO14772 594 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 FCGR1AP12314 374 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 TACR1P25103 407 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 HSPA13P48723 471 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 GTF2A1P52655 376 aaPredicted RBP13.68□□□□□ -0.22
LIG3-205ENST00000585941 RUNDC3AQ59EK9 446 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 IRGCQ6NXR0 463 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 IFNEQ86WN2 208 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 TMEM102Q8N9M5 508 aaPredicted RBP13.68□□□□□ -0.22
LIG3-205ENST00000585941 ICA1LQ8NDH6 482 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 OR8J2Q8NGG1 315 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 RPLP0P6Q8NHW5 317 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 CCDC115Q96NT0 180 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 PKP2Q99959 881 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 TTYH1Q9H313 450 aaPredicted RBP13.68□□□□□ -0.22
LIG3-205ENST00000585941 MVB12BQ9H7P6 319 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 DMRT3Q9NQL9 472 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 BATF3Q9NR55 127 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 VAPAQ9P0L0 249 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 EGFL7Q9UHF1 273 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 HEBP2Q9Y5Z4 205 aa13.68□□□□□ -0.22
LIG3-205ENST00000585941 TRBV5-3A0A0A0MS03 114 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 PRR19A6NJB7 356 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 H0YJX3 145 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 SLC31A1O15431 190 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 DFNA5O60443 496 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 PTX3P26022 381 aaPredicted RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 TIA1P31483 386 aaKnown RBP eCLIP13.67□□□□□ -0.22
LIG3-205ENST00000585941 HPCAL1P37235 193 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 RPL3P39023 403 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 RPS13P62277 151 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 CYP4F3Q08477 520 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 LRRC36Q1X8D7 754 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 PGS1Q32NB8 556 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 KIAA1324Q6UXG2 1013 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 TMIGD1Q6UXZ0 262 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 CAMKMTQ7Z624 323 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 SPPL2CQ8IUH8 684 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 LILRA2Q8N149 483 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 C1orf52Q8N6N3 182 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 FAM3CQ92520 227 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 NELL1Q92832 810 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 SH3KBP1Q96B97 665 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 SLCO4A1Q96BD0 722 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 C12orf66Q96MD2 445 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 GBP5Q96PP8 586 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 NR1H4Q96RI1 486 aaPredicted RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 FERD3LQ96RJ6 166 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 AIF1LQ9BQI0 150 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 THUMPD3Q9BV44 507 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 PAIP1Q9H074 479 aaKnown RBP13.67□□□□□ -0.22
LIG3-205ENST00000585941 OSGEPL1Q9H4B0 414 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 NT5DC2Q9H857 520 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 WASH6PQ9NQA3 447 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 SUFUQ9UMX1 484 aa13.67□□□□□ -0.22
LIG3-205ENST00000585941 TOR1BO14657 336 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 MBTPS2O43462 519 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 APBB3O95704 486 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 FUCA1P04066 466 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 ANXA4P09525 319 aaPredicted RBP13.66□□□□□ -0.22
LIG3-205ENST00000585941 CDH1P12830 882 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 COX7A2P14406 83 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 HOXB6P17509 224 aaKnown RBP13.66□□□□□ -0.22
LIG3-205ENST00000585941 NDUFV2P19404 249 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 MAT2AP31153 395 aaKnown RBP13.66□□□□□ -0.22
LIG3-205ENST00000585941 MTPNP58546 118 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 YBX1P67809 324 aaKnown RBP13.66□□□□□ -0.22
LIG3-205ENST00000585941 CCINQ13939 588 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 UAP1L1Q3KQV9 507 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 TBCELQ5QJ74 424 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 CHRDL2Q6WN34 429 aa13.66□□□□□ -0.22
LIG3-205ENST00000585941 FAM129CQ86XR2 697 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms