RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CETN2P41208 172 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 PTGISQ16647 500 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 Q6ZRP5 223 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 C11orf57Q6ZUT1 292 aaPredicted RBP3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 SLFN11Q7Z7L1 901 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 FAM219AQ8IW50 185 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 GATAD1Q8WUU5 269 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 PGM2Q96G03 612 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 SPAG5Q96R06 1193 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 USP28Q96RU2 1077 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 KRT12Q99456 494 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 TRIM51Q9BSJ1 452 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 EGLN1Q9GZT9 426 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 NYXQ9GZU5 481 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 PANK4Q9NVE7 773 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 ANAPC5Q9UJX4 755 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 PRSS21Q9Y6M0 314 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 RNF215Q9Y6U7 377 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 IGSF1Q8N6C5 1336 aa3.92□□□□□ -1.78
SMCHD1-204ENST00000581226 A0A1W2PPW3 197 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 A0A1W2PR80 420 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 ANXA2P2A6NMY6 339 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 H7C423 109 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 CCL24O00175 119 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 LUC7L3O95232 432 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SERPING1P05155 500 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 TCF4P15884 667 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 RPL35AP18077 110 aaKnown RBP3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 XGP55808 180 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 MTCP1P56278 107 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 CSNK2BP67870 215 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SGCGQ13326 291 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 PTPN14Q15678 1187 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 C6orf136Q5SQH8 315 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 FAAP20Q6NZ36 180 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 IL27RAQ6UWB1 636 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 LEKR1Q6ZMV7 388 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 STXBP4Q6ZWJ1 553 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 ZNRF4Q8WWF5 429 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 PIK3R3Q92569 461 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SLCO2A1Q92959 643 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 MOCOSQ96EN8 888 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 KLHL5Q96PQ7 755 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 RAB3IPQ96QF0 476 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 IWS1Q96ST2 819 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 CDCA3Q99618 268 aaPredicted RBP3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 FGFBP2Q9BYJ0 223 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SDCBP2Q9H190 292 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 ACTL8Q9H568 366 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SPHK2Q9NRA0 654 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 GIMAP2Q9UG22 337 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 ASIC3Q9UHC3 531 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 SNX7Q9UNH6 387 aa3.91□□□□□ -1.78
SMCHD1-204ENST00000581226 A0A087WUV0 522 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 A0A0J9YWU9 116 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 TSPY2A6NKD2 308 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 C2CD4DB7Z1M9 353 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 CCDC188H7C350 402 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 DCXO43602 365 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 KRT33AO76009 404 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 SORBS2O94875 1100 aaKnown RBP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 BAG3O95817 575 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 STAG3L1P0CL83 205 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 NPY4RP50391 375 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 GUCY2DQ02846 1103 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 CACNG1Q06432 222 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 TRIM29Q14134 588 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 TMEM132DQ14C87 1099 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 EFTUD2Q15029 972 aaKnown RBP eCLIP3.9□□□□□ -1.793e-6■□□□□ 10.7
SMCHD1-204ENST00000581226 RBBP7Q16576 425 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 FASTKD1Q53R41 847 aaKnown RBP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 LRRC73Q5JTD7 316 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 ABI3BPQ7Z7G0 1075 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 AMIGO1Q86WK6 493 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 FAM89BQ8N5H3 189 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 ZNF519Q8TB69 540 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 SEPT1Q8WYJ6 367 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 NSMAFQ92636 917 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 PYCR2Q96C36 320 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 AGAP3Q96P47 875 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 TRIM15Q9C019 465 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 RIMS4Q9H426 269 aaPredicted RBP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 PKD2L2Q9NZM6 624 aa3.9□□□□□ -1.79
SMCHD1-204ENST00000581226 TRBV4-1A0A0J9YWV2 114 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 ANTXRLA6NF34 631 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 CYSRT1A8MQ03 144 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 KPNA7A9QM74 516 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 TBX6O95947 436 aaPredicted RBP3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 IGHEP01854 428 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 QDPRP09417 244 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 ZSCAN5DPP0CG00 497 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 TRIM49P0CI25 452 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 TRIM49CP0CI26 452 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 PDGFRAP16234 1089 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 EPORP19235 508 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 PRKACGP22612 351 aa3.89□□□□□ -1.79
SMCHD1-204ENST00000581226 ELAVL4P26378 380 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms