RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KLHL14Q9P2G3 628 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 FTSJ1Q9UET6 329 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 BTBD3Q9Y2F9 522 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 TSC22D4Q9Y3Q8 395 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 PCDHGA11Q9Y5H2 935 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 USH1CQ9Y6N9 552 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 GOLGA4Q13439 2230 aaKnown RBP10.33□□□□□ -0.76
SS18-213ENST00000579640 H7BY64 318 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 B4GAT1O43505 415 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 ULK1O75385 1050 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 MYF5P13349 255 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CKMT2P17540 419 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CD22P20273 847 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 VARSP26640 1264 aaKnown RBP10.33□□□□□ -0.76
SS18-213ENST00000579640 GSTM2P28161 218 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SERPINB1P30740 379 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 GRIA3P42263 894 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 FOXA1P55317 472 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CSNK1G2P78368 415 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 REEP5Q00765 189 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 RELAQ04206 551 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 IFT88Q13099 833 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SLBPQ14493 270 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-213ENST00000579640 ZRSR2Q15696 482 aaKnown RBP10.33□□□□□ -0.76
SS18-213ENST00000579640 CPSF6Q16630 551 aaKnown RBP eCLIP10.33□□□□□ -0.76
SS18-213ENST00000579640 UGT3A2Q3SY77 523 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CLEC6AQ6EIG7 209 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 ZNF425Q6IV72 752 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 IRGCQ6NXR0 463 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 MED27Q6P2C8 311 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 WDR74Q6RFH5 385 aaPredicted RBP10.33□□□□□ -0.76
SS18-213ENST00000579640 NAXDQ8IW45 347 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 LAS2Q8IYD9 372 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 IFI44Q8TCB0 444 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 TWIST2Q8WVJ9 160 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 NCSTNQ92542 709 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SEC16BQ96JE7 1060 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 PRAP1Q96NZ9 151 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 KCNA7Q96RP8 456 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CCT8L2Q96SF2 557 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 CCDC3Q9BQI4 270 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 PLCD4Q9BRC7 762 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 DPH7Q9BTV6 452 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SARGQ9BW04 601 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 FAM107BQ9H098 131 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SEMA6CQ9H3T2 930 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 ELOVL6Q9H5J4 265 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 NPHS2Q9NP85 383 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 SLC6A20Q9NP91 592 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 C1GALT1Q9NS00 363 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 ADGRE2Q9UHX3 823 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 FIS1Q9Y3D6 152 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 TIMM22Q9Y584 194 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 DNAJC15Q9Y5T4 150 aa10.33□□□□□ -0.76
SS18-213ENST00000579640 OTOGLQ3ZCN5 2332 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 IGKV1-8A0A0C4DH67 115 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 TRBC2A0A5B9 178 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 SERTM1A2A2V5 107 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 OR2A25A4D2G3 310 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 TLCD2A6NGC4 264 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 TMEM233B4DJY2 109 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 MANBAO00462 879 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CAPN5O15484 640 aaPredicted RBP10.32□□□□□ -0.76
SS18-213ENST00000579640 C9P02748 559 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 GP1BAP07359 652 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CDH3P22223 829 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 ACP1P24666 158 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CD1CP29017 333 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 INHBCP55103 352 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 PHEXP78562 749 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 PERM1Q5SV97 790 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 FRG2Q64ET8 278 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CGB2Q6NT52 195 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 TMIGD1Q6UXZ0 262 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 SPATA21Q7Z572 469 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 ADCK2Q7Z695 626 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 PAQR7Q86WK9 346 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 Q8N9G6 341 aaPredicted RBP10.32□□□□□ -0.76
SS18-213ENST00000579640 TTLQ8NG68 377 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CCT6BQ92526 530 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 USP7Q93009 1102 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 FRG2BQ96QU4 278 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 CDC6Q99741 560 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 ZMYND15Q9H091 742 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 RXFP3Q9NSD7 469 aa10.32□□□□□ -0.76
SS18-213ENST00000579640 APOBEC2Q9Y235 224 aaKnown RBP10.32□□□□□ -0.76
SS18-213ENST00000579640 MN1Q10571 1320 aaPredicted RBP10.31□□□□□ -0.76
SS18-213ENST00000579640 C4orf47A7E2U8 309 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 ZNF195O14628 629 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 FFAR3O14843 346 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 GPR42O15529 346 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 SNX3O60493 162 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 VPS4BO75351 444 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 HSD3B1P14060 373 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 EZRP15311 586 aaKnown RBP10.31□□□□□ -0.76
SS18-213ENST00000579640 MAGP20916 626 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 HSD3B2P26439 372 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 SERPINB3P29508 390 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 AQP5P55064 265 aa10.31□□□□□ -0.76
SS18-213ENST00000579640 YBX1P67809 324 aaKnown RBP10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms