RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 GALNT18Q6P9A2 607 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 CBLL1Q75N03 491 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 THOC6Q86W42 341 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 REM2Q8IYK8 340 aaPredicted RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 SETD9Q8NE22 299 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 DDHD1Q8NEL9 900 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 OR2A12Q8NGT7 310 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 MTERF1Q99551 399 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 CCDC90BQ9GZT6 254 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 RIBC2Q9H4K1 309 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 LMCD1Q9NZU5 365 aa22.05■■□□□ 1.12
VPS53-211ENST00000571805 TDRKHQ9Y2W6 561 aaKnown RBP22.05■■□□□ 1.12
VPS53-211ENST00000571805 TMEM202A6NGA9 273 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ARHGEF33A8MVX0 844 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 MYO1GB0I1T2 1018 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 E7EQ34 232 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 NDUFS2O75306 463 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 CPSF4O95639 269 aaKnown RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 MYCP01106 439 aaPredicted RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 FABP3P05413 133 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 FSHRP23945 695 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ACVR2AP27037 513 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 CD6P30203 668 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 DOC2AQ14183 400 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 SF1Q15637 639 aaKnown RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 ZNF648Q5T619 568 aaPredicted RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 EIF3MQ7L2H7 374 aaKnown RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 ZNF554Q86TJ5 538 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 CPA6Q8N4T0 437 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 DPH2Q9BQC3 489 aaPredicted RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 DUSP21Q9H596 190 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 PALMDQ9NP74 551 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ERVK-18Q9QC07 812 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 AASSQ9UDR5 926 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ERVW-1Q9UQF0 538 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 RUVBL1Q9Y265 456 aaKnown RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 HSPE1-MOB4S4R3N1 261 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 WASH3PC4AMC7 463 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 J3QRK9 145 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 LRG1P02750 347 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 GSTM1P09488 218 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 LAMP1P11279 417 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 CYP4B1P13584 511 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ZNF12P17014 697 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 FPR1P21462 350 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 ARHGDIAP52565 204 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 DEFB103AP81534 67 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 GSTM4Q03013 218 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 Q6ZVL8 140 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 SNRNP27Q8WVK2 155 aaKnown RBP22.04■■□□□ 1.12
VPS53-211ENST00000571805 DOCK6Q96HP0 2047 aa22.04■■□□□ 1.12
VPS53-211ENST00000571805 CFAP99D6REC4 459 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 PSIP1O75475 530 aaKnown RBP22.03■■□□□ 1.12
VPS53-211ENST00000571805 AP2A2O94973 939 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 ZNF30P17039 623 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 HOXA9P31269 272 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 FMO3P31513 532 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 RAB15P59190 212 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 ABHD11Q8NFV4 315 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 HSH2DQ96JZ2 352 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 PLXNA2O75051 1894 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 HELZP42694 1942 aaKnown RBP22.03■■□□□ 1.12
VPS53-211ENST00000571805 OR2AG2A6NM03 316 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 CTSAP10619 480 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 VIPR1P32241 457 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 SLC35A2P78381 396 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 TLE2Q04725 743 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 ACOX1Q15067 660 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 IQCCQ4KMZ1 466 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 C16orf87Q6PH81 154 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 SYNPOQ8N3V7 929 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 MYLIPQ8WY64 445 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 PDP1Q9P0J1 537 aaPredicted RBP22.03■■□□□ 1.12
VPS53-211ENST00000571805 PCDHB11Q9Y5F2 797 aa22.03■■□□□ 1.12
VPS53-211ENST00000571805 JRKO75564 520 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 PABPC1P11940 636 aaKnown RBP22.02■■□□□ 1.12
VPS53-211ENST00000571805 DCDC1P59894 354 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 CXCR4P61073 352 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 RAE1P78406 368 aaKnown RBP22.02■■□□□ 1.12
VPS53-211ENST00000571805 DDX39BQ13838 428 aaKnown RBP22.02■■□□□ 1.12
VPS53-211ENST00000571805 VEZF1Q14119 521 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 BRAT1Q6PJG6 821 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 COX4I2Q96KJ9 171 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 DEFB118Q96PH6 123 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 OR4K3Q96R72 315 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 PCDH12Q9NPG4 1184 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 NDRG4Q9ULP0 352 aaKnown RBP22.02■■□□□ 1.12
VPS53-211ENST00000571805 PCDHGA10Q9Y5H3 936 aa22.02■■□□□ 1.12
VPS53-211ENST00000571805 FADS2P1A8MWK0 482 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 H0YIV9 168 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 ETHE1O95571 254 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 ETV3P41162 512 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 IL1RL1Q01638 556 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 ACSM2AQ08AH3 577 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 NPTX1Q15818 432 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 CCSMST1Q4G0I0 132 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 ACSM2BQ68CK6 577 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 LILRA6Q6PI73 481 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 SLC39A5Q6ZMH5 540 aa22.02■■□□□ 1.11
VPS53-211ENST00000571805 DCDC5Q6ZRR9 648 aa22.02■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms