RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GARNL3Q5VVW2 1013 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 LCN10Q6JVE6 187 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 PRMT9Q6P2P2 845 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 FBXO42Q6P3S6 717 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 LCTLQ6UWM7 567 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 ADAMTSL2Q86TH1 951 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 RAB43Q86YS6 212 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 EXD3Q8N9H8 876 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 FKBP10Q96AY3 582 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 FBXL8Q96CD0 374 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 RUFY1Q96T51 708 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 GPR22Q99680 433 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 MCMBPQ9BTE3 642 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 ATG10Q9H0Y0 220 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 ZDHHC18Q9NUE0 388 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 CTNNAL1Q9UBT7 734 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 CDC14AQ9UNH5 594 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 KCNMB2Q9Y691 235 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 SCN3AQ9NY46 2000 aa12.81□□□□□ -0.36
CLK3-216ENST00000564468 PTPN13Q12923 2485 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 CYSRT1A8MQ03 144 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 H0YGG7 62 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 PRPF4O43172 522 aaKnown RBP eCLIP12.8□□□□□ -0.36
CLK3-216ENST00000564468 ONECUT2O95948 504 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 IGHEP01854 428 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 CTSBP07858 339 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 ANXA5P08758 320 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 STMN1P16949 149 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 FOLR3P41439 243 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 HNMTP50135 292 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 ARF3P61204 181 aaPredicted RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 RPS15AP62244 130 aaKnown RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 YBX1P67809 324 aaKnown RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 CDKL1Q00532 357 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 KCNAB2Q13303 367 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 SSPNQ14714 243 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 KBTBD12Q3ZCT8 623 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 ATP1A1-AS1Q5TC04 95 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 FRMPD2BQ6IN97 320 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 TMEM207Q6UWW9 146 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 FRA10AC1Q70Z53 315 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 APLFQ8IW19 511 aaPredicted RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 TBC1D19Q8N5T2 526 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 PPM1NQ8N819 430 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 FBF1Q8TES7 1133 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 ALKBH8Q96BT7 664 aaKnown RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 THAP11Q96EK4 314 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 MVB12AQ96EY5 273 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 CABS1Q96KC9 395 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 SGPP1Q9BX95 441 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 DERL2Q9GZP9 239 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 SLC25A18Q9H1K4 315 aa12.8□□□□□ -0.36
CLK3-216ENST00000564468 MTO1Q9Y2Z2 717 aaKnown RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 TLN1Q9Y490 2541 aaKnown RBP12.8□□□□□ -0.36
CLK3-216ENST00000564468 LOC105369274A0A096LPK9 316 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 IGKV1-8A0A0C4DH67 115 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 LOC102723532A0A0G2JNH3 316 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 MKRN2OSH3BPM6 223 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 H7BY64 318 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PYCARD-AS1I3L0S3 204 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 RFPL1O75677 317 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PIAS1O75925 651 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 GUCA1CO95843 209 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 FURINP09958 794 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PMS2P54278 862 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 RRADP55042 308 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 ATP6V0D1P61421 351 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 NFATC3Q12968 1075 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 ZNF460Q14592 562 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 NDUFA9Q16795 377 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PRTGQ2VWP7 1150 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 MRPL14Q6P1L8 145 aaKnown RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 SBSNQ6UWP8 590 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 MBOAT1Q6ZNC8 495 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 OVCH1Q7RTY7 1134 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 CCDC91Q7Z6B0 441 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 RELL1Q8IUW5 271 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 SPNS2Q8IVW8 549 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 CEP97Q8IW35 865 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 OR4N4Q8N0Y3 316 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 CSNK1A1LQ8N752 337 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 NOA1Q8NC60 698 aaKnown RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 OR2Y1Q8NGV0 311 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 OR56A3Q8NH54 315 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 IFT81Q8WYA0 676 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 NACC2Q96BF6 587 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PTERQ96BW5 349 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 VPS50Q96JG6 964 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 PRAP1Q96NZ9 151 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 OR2A5Q96R48 311 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 FMO2Q99518 471 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 EGFL8Q99944 293 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 WDR54Q9H977 334 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 ZNF304Q9HCX3 659 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 STARD5Q9NSY2 213 aa12.79□□□□□ -0.36
CLK3-216ENST00000564468 CUEDC1Q9NWM3 386 aaPredicted RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 DMGDHQ9UI17 866 aaKnown RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 NXT1Q9UKK6 140 aaKnown RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 PTRH2Q9Y3E5 179 aaKnown RBP12.79□□□□□ -0.36
CLK3-216ENST00000564468 OARD1Q9Y530 152 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms