RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 MOSPD3O75425 235 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 DNAJC8O75937 253 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 OR6A2O95222 327 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 MT-ND1P03886 318 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CALRP27797 417 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 ASMTP46597 345 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 NCBP2P52298 156 aaKnown RBP eCLIP8.94□□□□□ -0.98
VPS39-205ENST00000562258 POLR2JP52435 117 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 CLNS1AP54105 237 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 EPHA5P54756 1037 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SPEM2Q0P670 501 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 KLF10Q13118 480 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CATSPEREQ5SY80 951 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ABHD13Q7L211 337 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 VN1R5Q7Z5H4 357 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 TEX26Q8N6G2 289 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CMTM7Q96FZ5 175 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 PKP4Q99569 1192 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ARNT2Q9HBZ2 717 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 SEMA3GQ9NS98 782 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 MARK1Q9P0L2 795 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 IFT80Q9P2H3 777 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 PTGDR2Q9Y5Y4 395 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 NUAK1O60285 661 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CTSLP07711 333 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 PTX3P26022 381 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 RRM2P31350 389 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CSNK1DP48730 415 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 NAA20P61599 178 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 MRPS22P82650 360 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 RALGDSQ12967 914 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 NKAIN2Q5VXU1 208 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ZNF534Q76KX8 674 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ADGRG6Q86SQ4 1221 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 AADATQ8N5Z0 425 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CPSF7Q8N684 471 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 OR52E1Q8NGJ3 308 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ZNF563Q8TA94 476 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 CD200R1Q8TD46 325 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ITCHQ96J02 903 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ZFRQ96KR1 1074 aaKnown RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 FAM129BQ96TA1 746 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ADPRHL2Q9NX46 363 aa8.94□□□□□ -0.98
VPS39-205ENST00000562258 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.94□□□□□ -0.98
VPS39-205ENST00000562258 ARHGEF33A8MVX0 844 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CAPN5O15484 640 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 KRT75O95678 551 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PRLP01236 227 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OTX2P32243 289 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 BIKQ13323 160 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 ZNF267Q14586 743 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 SLC9B1Q4ZJI4 515 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 DENND5AQ6IQ26 1287 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 STK32CQ86UX6 486 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 KIAA2013Q8IYS2 634 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CDK20Q8IZL9 346 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CADM2Q8N3J6 435 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 ZNF276Q8N554 614 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 MSANTD3Q96H12 275 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OR52B2Q96RD2 323 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 INSM2Q96T92 566 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 LGR4Q9BXB1 951 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 AKTIPQ9H8T0 292 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 FSCN3Q9NQT6 498 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 STX18Q9P2W9 335 aaKnown RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 NOTCH2Q04721 2471 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 GNB5O14775 395 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 C1GALT1C1LP0DN25 315 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PTPN4P29074 926 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CLK3P49761 638 aaKnown RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 ICE2Q659A1 982 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 LRRC70Q7Z2Q7 622 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PATL1Q86TB9 770 aaKnown RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 ISCA2Q86U28 154 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CYP4Z1Q86W10 505 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 TTLQ8NG68 377 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OR8K5Q8NH50 307 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PRRG4Q9BZD6 226 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 EXD2Q9NVH0 621 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 U3KQV3 271 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 PLXNA1Q9UIW2 1896 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 A0A1W2PRB8 838 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 TMEM221A6NGB7 291 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 M0R296 226 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OLFM2O95897 454 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 CSNK2A2P19784 350 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 DRD4P21917 467 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 YAP1P46937 504 aaKnown RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 SCTRP47872 440 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 SIM1P81133 766 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 MPP2Q14168 576 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 RCN1Q15293 331 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 TAZQ16635 292 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 HSF5Q4G112 596 aaPredicted RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 SAMD4BQ5PRF9 694 aaKnown RBP8.93□□□□□ -0.98
VPS39-205ENST00000562258 ANXA8L1Q5VT79 327 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 OR4F3Q6IEY1 312 aa8.93□□□□□ -0.98
VPS39-205ENST00000562258 DEF8Q6ZN54 512 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms