RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 ZNF534Q76KX8 674 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 EXOC3L1Q86VI1 746 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 LRRC6Q86X45 466 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 SRRM1Q8IYB3 904 aaKnown RBP13.01□□□□□ -0.33
SMAD3-214ENST00000560402 ZADH2Q8N4Q0 377 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 RAB42Q8N4Z0 105 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 LINC01555Q8NAE3 123 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 OR6P1Q8NGX9 317 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 BCAS4Q8TDM0 211 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 PAFAH2Q99487 392 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 ILKAPQ9H0C8 392 aaPredicted RBP13.01□□□□□ -0.33
SMAD3-214ENST00000560402 SLC26A1Q9H2B4 701 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 ZNF552Q9H707 407 aaPredicted RBP13.01□□□□□ -0.33
SMAD3-214ENST00000560402 SSU72Q9NP77 194 aaKnown RBP13.01□□□□□ -0.33
SMAD3-214ENST00000560402 ATP13A2Q9NQ11 1180 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 CATSPERZQ9NTU4 200 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 LUZP4Q9P127 313 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.01□□□□□ -0.33
SMAD3-214ENST00000560402 SLC2A6Q9UGQ3 507 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 GNPTGQ9UJJ9 305 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 SLC39A10Q9ULF5 831 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 FAM169AQ9Y6X4 670 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 DOCK10Q96BY6 2186 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 TEX15Q9BXT5 2789 aa13.01□□□□□ -0.33
SMAD3-214ENST00000560402 TCRBV9S1A1TA0A576 114 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 MAGEB16A2A368 324 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 GMNCA6NCL1 334 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 DSCR3O14972 297 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CNOT3O75175 753 aaKnown RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 SEMA7AO75326 666 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 BANF1O75531 89 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 KRT38O76015 456 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 SLCO2B1O94956 709 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CHN1P15882 459 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 MMP11P24347 488 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CNTFP26441 200 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 NPY2RP49146 381 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CSE1LP55060 971 aaKnown RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 MRPL49Q13405 166 aaKnown RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 GRM7Q14831 915 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 SLC9A5Q14940 896 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 ZSCAN26Q16670 478 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 ADGRD1Q6QNK2 874 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CAND1Q86VP6 1230 aaKnown RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 SLC26A11Q86WA9 606 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 CTAGE3PQ8IX95 158 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 TTC29Q8NA56 475 aaPredicted RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 LKAAEAR1Q8TD35 194 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 PPP4R1Q8TF05 950 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 SNRNP40Q96DI7 357 aaKnown RBP13□□□□□ -0.33
SMAD3-214ENST00000560402 MTBPQ96DY7 904 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 IL1RAPL1Q9NZN1 696 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 TXNDC16Q9P2K2 825 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 ZNF180Q9UJW8 692 aa13□□□□□ -0.33
SMAD3-214ENST00000560402 TMEM120BA0PK00 339 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 FITM1A5D6W6 292 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 ERICH4A6NGS2 130 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 TARM1B6A8C7 271 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 CTSBP07858 339 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 ITGAXP20702 1163 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 RPS3P23396 243 aaKnown RBP eCLIP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 AOAHP28039 575 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 CCNFP41002 786 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 SLC18A1P54219 525 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 ELOAQ14241 798 aaKnown RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 GRB7Q14451 532 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 PCID2Q5JVF3 399 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 SPANXN3Q5MJ09 141 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 UBAP2Q5T6F2 1119 aaKnown RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 IRAK1BP1Q5VVH5 260 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 Q6ZS92 163 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 TTLL10Q6ZVT0 673 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 CYS1Q717R9 158 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 OVCH1Q7RTY7 1134 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 TRABD2AQ86V40 505 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 TAX1BP1Q86VP1 789 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 VRK3Q8IV63 474 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 MCATQ8IVS2 390 aaKnown RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 GABPB2Q8TAK5 448 aaPredicted RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 HMGCLL1Q8TB92 370 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 MAGEC3Q8TD91 643 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 SLC44A1Q8WWI5 657 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 RAD51AP1Q96B01 352 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 ZNF778Q96MU6 729 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 ZNF285Q96NJ3 590 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 SPSB2Q99619 263 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 WDR77Q9BQA1 342 aaPredicted RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 FAM107BQ9H098 131 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 PPANQ9NQ55 473 aaKnown RBP12.99□□□□□ -0.33
SMAD3-214ENST00000560402 SLC22A11Q9NSA0 550 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 CUTCQ9NTM9 273 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 CTNNAL1Q9UBT7 734 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 PCDHGA10Q9Y5H3 936 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 KLK4Q9Y5K2 254 aa12.99□□□□□ -0.33
SMAD3-214ENST00000560402 EBAG9O00559 213 aa12.98□□□□□ -0.33
SMAD3-214ENST00000560402 PRPF4O43172 522 aaKnown RBP eCLIP12.98□□□□□ -0.331e-11■□□□□ 11.3
SMAD3-214ENST00000560402 SRPX2O60687 465 aaPredicted RBP12.98□□□□□ -0.33
SMAD3-214ENST00000560402 ZWINTO95229 277 aa12.98□□□□□ -0.33
SMAD3-214ENST00000560402 FAM107AO95990 144 aa12.98□□□□□ -0.33
SMAD3-214ENST00000560402 ALAS2P22557 587 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms