RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 IYDQ6PHW0 289 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 UNC5DQ6UXZ4 953 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 NEK10Q6ZWH5 1172 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 FAM214BQ7L5A3 538 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ADAMTSL2Q86TH1 951 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 DCP2Q8IU60 420 aaKnown RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 KRTAP1-3Q8IUG1 177 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 NUDCD3Q8IVD9 361 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 DCUN1D3Q8IWE4 304 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 TRIM48Q8IWZ4 208 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SPACA3Q8IXA5 215 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SLC35F3Q8IY50 421 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 LRRC56Q8IYG6 542 aaPredicted RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 SYTL1Q8IYJ3 562 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 LRRC34Q8IZ02 419 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 LSMEM2Q8N112 164 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 MFSD4AQ8N468 514 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SFRP1Q8N474 314 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 RNF175Q8N4F7 328 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 EID2Q8N6I1 236 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 TEX9Q8N6V9 391 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 Q8N9G6 341 aaPredicted RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 SNX31Q8N9S9 440 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 PDPRQ8NCN5 879 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 OR4E2Q8NGC2 313 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 OR52B6Q8NGF0 335 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 OR9A1PQ8NGU1 263 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 OR10G6Q8NH81 332 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 RHEBL1Q8TAI7 183 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 STAG3L4Q8TBR4 150 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SAP25Q8TEE9 199 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 TRPC4APQ8TEL6 797 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ZNF483Q8TF39 744 aaPredicted RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 ZNF480Q8WV37 535 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 DYDC1Q8WWB3 177 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 CKAP2Q8WWK9 683 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 FAM168AQ92567 244 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ZNF75CPQ92670 426 aaPredicted RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 RSC1A1Q92681 617 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 FBXL8Q96CD0 374 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 PDLIM5Q96HC4 596 aaKnown RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 COX4I2Q96KJ9 171 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 PPP1R36Q96LQ0 422 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 OR4K3Q96R72 315 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 KCNA7Q96RP8 456 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SORT1Q99523 831 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ACAT2Q9BWD1 397 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SLC12A9Q9BXP2 914 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 FAM107BQ9H098 131 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 TRIT1Q9H3H1 467 aaKnown RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 GSTO2Q9H4Y5 243 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SYNPO2LQ9H987 977 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SEMA4BQ9NPR2 832 aaPredicted RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 OXSMQ9NWU1 459 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 TRNAU1APQ9NX07 287 aaKnown RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 KLHL42Q9P2K6 505 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SPASTQ9UBP0 616 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ZNF225Q9UK10 706 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 PTBP2Q9UKA9 531 aaKnown RBP5.04□□□□□ -1.6
SPG11-220ENST00000559933 RAB23Q9ULC3 237 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 ACSL5Q9ULC5 683 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 PTGDR2Q9Y5Y4 395 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 RNF215Q9Y6U7 377 aa5.04□□□□□ -1.6
SPG11-220ENST00000559933 SNRNP200O75643 2136 aaKnown RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 GSAPA4D1B5 854 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 OR6C74A6NCV1 312 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 SYCE1LA8MT33 242 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 LMO7DNF2Z398 122 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 F8W8V4 182 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 EIF3FO00303 357 aaPredicted RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 E2F3O00716 465 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 OR7A17O14581 309 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 CDX4O14627 284 aaPredicted RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 KPNA5O15131 536 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 SLC16A5O15375 505 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 KATNA1O75449 491 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 IPO13O94829 963 aaKnown RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 SUPT7LO94864 414 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 CBX7O95931 251 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 VIPP01282 170 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 SERPINE1P05121 402 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 JUNP05412 331 aaKnown RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 PGRP06401 933 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 ANXA5P08758 320 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 CDH1P12830 882 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 PVRP15151 417 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 POLR2CP19387 275 aaPredicted RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 CD22P20273 847 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 TAC1P20366 129 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 CSF2RBP32927 897 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 ARL1P40616 181 aaPredicted RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 MDH1P40925 334 aaKnown RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 HALP42357 657 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 SLC6A12P48065 614 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 LSSP48449 732 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 ARRB1P49407 418 aaPredicted RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 HTR6P50406 440 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 BLKP51451 505 aa5.03□□□□□ -1.6
SPG11-220ENST00000559933 KPNA2P52292 529 aaKnown RBP5.03□□□□□ -1.6
SPG11-220ENST00000559933 PNLIPRP1P54315 467 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms