RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 C2CD4AQ8NCU7 369 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 ST6GALNAC3Q8NDV1 305 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 MECRQ9BV79 373 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 TRIM8Q9BZR9 551 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 NPHS2Q9NP85 383 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 GPR83Q9NYM4 423 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 TMEM216Q9P0N5 145 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 MID2Q9UJV3 735 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 RIMKLBQ9ULI2 386 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 OSGIN2Q9Y236 505 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 FARSAQ9Y285 508 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 B3GNT3Q9Y2A9 372 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 COPG1Q9Y678 874 aaKnown RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 DNMT3AQ9Y6K1 912 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-230ENST00000557427 SLC30A1Q9Y6M5 507 aa12.07□□□□□ -0.48
SHMT2-230ENST00000557427 CFAP73A6NFT4 308 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 MROH6A6NGR9 719 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 E2F3O00716 465 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 ATP5HO75947 161 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 AHSGP02765 367 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 C2P06681 752 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 RALBP11234 206 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 ITGALP20701 1170 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 GRK2P25098 689 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 PTGER4P35408 488 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 HALP42357 657 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 ACVR1Q04771 509 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 STX3Q13277 289 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 PCLAFQ15004 111 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 AGAP9Q5VTM2 703 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 WASH2PQ6VEQ5 465 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 SNX20Q7Z614 316 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 CCDC91Q7Z6B0 441 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 CMC1Q7Z7K0 106 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 PPP1R3BQ86XI6 285 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 AVL9Q8NBF6 648 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 RFWD2Q8NHY2 731 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 RDH11Q8TC12 318 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 ULK4Q96C45 1275 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 CDKN2AIPNLQ96HQ2 116 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 TGM7Q96PF1 710 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 LRRC37BQ96QE4 947 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 SIKE1Q9BRV8 207 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 SLC40A1Q9NP59 571 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 WASH6PQ9NQA3 447 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 THAP1Q9NVV9 213 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 SMOXQ9NWM0 555 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-230ENST00000557427 COPG2Q9UBF2 871 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 SLC2A6Q9UGQ3 507 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 FBXO5Q9UKT4 447 aa12.06□□□□□ -0.48
SHMT2-230ENST00000557427 CFAP20Q9Y6A4 193 aaKnown RBP12.06□□□□□ -0.48
SHMT2-230ENST00000557427 MGAT4DA6NG13 374 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 H0YHG0 523 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 TOX3O15405 576 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 UBXN7O94888 489 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 SERPINE1P05121 402 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 GABRB3P28472 473 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 CD151P48509 253 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 ARFIP2P53365 341 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 PRKAA2P54646 552 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 PER3P56645 1201 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 NCALDP61601 193 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 RPS15P62841 145 aaKnown RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 GPR18Q14330 331 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 RPE65Q16518 533 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 METRNLQ641Q3 311 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 LCN10Q6JVE6 187 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 NEPROQ6NW34 567 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 SERPINA9Q86WD7 417 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 CRLF3Q8IUI8 442 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 NXPE1Q8N323 547 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 KLHL6Q8WZ60 621 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 THOC1Q96FV9 657 aaKnown RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 ZNF514Q96K75 400 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 TSNARE1Q96NA8 513 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 INSM2Q96T92 566 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 COPS8Q99627 209 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 WWP1Q9H0M0 922 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 MYLK2Q9H1R3 596 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 EPB41L1Q9H4G0 881 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 KCNK13Q9HB14 408 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 TXLNGQ9NUQ3 528 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 IMP3Q9NV31 184 aaKnown RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 NLE1Q9NVX2 485 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-230ENST00000557427 SLC39A10Q9ULF5 831 aa12.05□□□□□ -0.48
SHMT2-230ENST00000557427 ZGRF1Q86YA3 2104 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ZNF469Q96JG9 3925 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 FAM95CA0A1B0GW59 222 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 OR51F1A6NGY5 319 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 LILRA5A6NI73 299 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 AGAP14A8MT82 685 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CFAP99D6REC4 459 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 GOLGA8TH3BQL2 631 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 H2AFYO75367 372 aaKnown RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 ATP1B2P14415 290 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CPA3P15088 417 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 FOLR1P15328 257 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 CRABP2P29373 138 aa12.04□□□□□ -0.48
SHMT2-230ENST00000557427 SLC1A2P43004 574 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms