RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 VSX2P58304 361 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 CSNK1G2P78368 415 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 MEF2AQ02078 507 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 CLN3Q13286 438 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 PFKFB4Q16877 469 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 CATSPEREQ5SY80 951 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 C16orf46Q6P387 395 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 FBXO42Q6P3S6 717 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 TIPARPQ7Z3E1 657 aaKnown RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 TMPRSS11BQ86T26 416 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 KLHDC8AQ8IYD2 350 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 GPR135Q8IZ08 494 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 OR4N4Q8N0Y3 316 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 ZNF655Q8N720 491 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 ACMSDQ8TDX5 336 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 SPRY4Q9C004 299 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 CNOT10Q9H9A5 744 aaKnown RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 STARD5Q9NSY2 213 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 TMEM184CQ9NVA4 438 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 TMEM216Q9P0N5 145 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 TMEM184BQ9Y519 407 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-225ENST00000556798 CCDC88CQ9P219 2028 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 SEC16AO15027 2179 aa16.75■□□□□ 0.27
SHMT2-225ENST00000556798 ZFHX4Q86UP3 3567 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 FEZF1A0PJY2 475 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 CCDC189A1A4V9 331 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 CCDC151A5D8V7 595 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 MAP2K7O14733 419 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 ZSCAN9O15535 394 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 ZNF749O43361 778 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 RAD1O60671 282 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 STK16O75716 305 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 STATHP02808 62 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 EIF2S1P05198 315 aaKnown RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 EZRP15311 586 aaKnown RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 EIF2S3P41091 472 aaKnown RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 ZNF844Q08AG5 666 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 C4orf33Q8N1A6 199 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 RIBC1Q8N443 379 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 SNX31Q8N9S9 440 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 SLC38A9Q8NBW4 561 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 UBTD2Q8WUN7 234 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 MRPL57Q9BQC6 102 aaKnown RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 CD244Q9BZW8 370 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 SPNS1Q9H2V7 528 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 MRPL46Q9H2W6 279 aaKnown RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 ACTR5Q9H9F9 607 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-225ENST00000556798 DNAJC11Q9NVH1 559 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 LGALS13Q9UHV8 139 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 USP24Q9UPU5 2620 aa16.74■□□□□ 0.27
SHMT2-225ENST00000556798 LRRC14BA6NHZ5 514 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 H0YGG7 62 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 KLK10O43240 276 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 KLK8O60259 260 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 CPNE3O75131 537 aaKnown RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SBK3P0C264 359 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ATXN8OSP0DMR3 200 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 HRH2P25021 359 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 VARSP26640 1264 aaKnown RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 CCR8P51685 355 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ARF3P61204 181 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 CDC16Q13042 620 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 GPS2Q13227 327 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SRSF6Q13247 344 aaKnown RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SETDB1Q15047 1291 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 KRT71Q3SY84 523 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 WASHC2DQ5SRD0 308 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SH2D5Q6ZV89 423 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 LRRC70Q7Z2Q7 622 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 VASH2Q86V25 355 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 DTX1Q86Y01 620 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 NLGN4XQ8N0W4 816 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 CNPY4Q8N129 248 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 PTGR2Q8N8N7 351 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ABHD11Q8NFV4 315 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 NLGN4YQ8NFZ3 816 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 CLIP3Q96DZ5 547 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ZIM3Q96PE6 472 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 OR2A5Q96R48 311 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ROPN1BQ9BZX4 212 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SLC7A5P2Q9GIP4 190 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 ROPN1Q9HAT0 212 aaPredicted RBP16.73■□□□□ 0.27
SHMT2-225ENST00000556798 PCDHB3Q9Y5E6 796 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 KCNE2Q9Y6J6 123 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 SCN3AQ9NY46 2000 aa16.73■□□□□ 0.27
SHMT2-225ENST00000556798 P2RX6O15547 441 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 CTIFO43310 598 aaKnown RBP16.72■□□□□ 0.27
SHMT2-225ENST00000556798 SIX3O95343 332 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-225ENST00000556798 KRT4P19013 534 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 EPORP19235 508 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 BCL6P41182 706 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 ALDH18A1P54886 795 aaKnown RBP16.72■□□□□ 0.27
SHMT2-225ENST00000556798 PDK4Q16654 411 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 ST3GAL2Q16842 350 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 BEND6Q5SZJ8 279 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-225ENST00000556798 TLDC1Q6P9B6 456 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 NXPE4Q6UWF7 544 aa16.72■□□□□ 0.27
SHMT2-225ENST00000556798 C6orf15Q6UXA7 325 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-225ENST00000556798 SPACA3Q8IXA5 215 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms