RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 GSK3BP49841 420 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 MEF2AQ02078 507 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-212ENST00000554467 LIPEQ05469 1076 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 ELP6Q0PNE2 266 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 PMS2P3Q13401 168 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 ZBED5Q49AG3 693 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 GTDC1Q4AE62 458 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 ATAT1Q5SQI0 421 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 KIAA1211LQ6NV74 962 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 C16orf87Q6PH81 154 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 LRRC70Q7Z2Q7 622 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 SYTL1Q8IYJ3 562 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 ATAD3AQ9NVI7 634 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 ZIM2Q9NZV7 527 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 CLEC1BQ9P126 229 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 THAP10Q9P2Z0 257 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-212ENST00000554467 LEF1Q9UJU2 399 aaPredicted RBP11.32□□□□□ -0.6
SHMT2-212ENST00000554467 POU2F3Q9UKI9 436 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 EIF3LQ9Y262 564 aaKnown RBP11.32□□□□□ -0.6
SHMT2-212ENST00000554467 PCDHA9Q9Y5H5 950 aa11.32□□□□□ -0.6
SHMT2-212ENST00000554467 IFRD1O00458 451 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 DFNA5O60443 496 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CNOT3O75175 753 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 POP7O75817 140 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 GSNP06396 782 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 C8BP07358 591 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 LAMP2P13473 410 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TCEA1P23193 301 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 IMPA1P29218 277 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 OXTRP30559 389 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TUBA4AP68366 448 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 PIP5KL1Q5T9C9 394 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HACD2Q6Y1H2 254 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 GPR141Q7Z602 305 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HEATR4Q86WZ0 1026 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CADM3Q8N126 398 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 AURKBQ96GD4 344 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 DOK1Q99704 481 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 DPY30Q9C005 99 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 DZANK1Q9NVP4 752 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 KLHL42Q9P2K6 505 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ERGIC3Q9Y282 383 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TRIM64CA6NLI5 447 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 KPNA5O15131 536 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ENO2P09104 434 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TAS2R38P59533 333 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 DOC2AQ14183 400 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 MINDY1Q8N5J2 469 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CATSPER1Q8NEC5 780 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 USP7Q93009 1102 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 RMND5BQ96G75 393 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HOPXQ9BPY8 73 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ACAT2Q9BWD1 397 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 NPLQ9BXD5 320 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ALG2Q9H553 416 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 MBNL1Q9NR56 388 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 SLC6A13Q9NSD5 602 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 C1orf109Q9NX04 203 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CLDND1Q9NY35 253 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 SLC23A2Q9UGH3 650 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 COL6A3P12111 3177 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 KCNE1BA0A087WTH5 132 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TRIM64BA6NI03 449 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 SLC28A1O00337 649 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 PSIP1O75475 530 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 PAK4O96013 591 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 C1QCP02747 245 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 MAT2AP31153 395 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HSPA13P48723 471 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HNMTP50135 292 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ITGADQ13349 1161 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 NR1D2Q14995 579 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TMEM26Q6ZUK4 368 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TRIM46Q7Z4K8 759 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 NRSN1Q8IZ57 195 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ZNF786Q8N393 782 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 HDDC3Q8N4P3 179 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CYGBQ8WWM9 190 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 KCTD14Q9BQ13 255 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 TRPV4Q9HBA0 871 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 RAD18Q9NS91 495 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 ABCD2Q9UBJ2 740 aa11.31□□□□□ -0.6
SHMT2-212ENST00000554467 CNOT11Q9UKZ1 510 aaKnown RBP11.31□□□□□ -0.6
SHMT2-212ENST00000554467 C1QTNF3-AMACRE9PGA6 284 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 NPC1O15118 1278 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 ARPC2O15144 300 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 LILRB5O75023 590 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 CATP04040 527 aaKnown RBP11.3□□□□□ -0.6
SHMT2-212ENST00000554467 PCNAP12004 261 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 MAPK10P53779 464 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 OR4D2P58180 307 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 RHDQ02161 417 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 PGS1Q32NB8 556 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 TBCELQ5QJ74 424 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 CACHD1Q5VU97 1274 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 GPR107Q5VW38 600 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 FRG2Q64ET8 278 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 DLEU7Q6UYE1 221 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 FAM47BQ8NA70 645 aa11.3□□□□□ -0.6
SHMT2-212ENST00000554467 FRG2BQ96QU4 278 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms